1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtcaattcttacagtttgcatagtttgttgaatgtacttttacttttaccgtagtacaatgctcataatgtagaatactgtaaccagtttgcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
species | Zea mays |
transcript | GRMZM2G050961_T06 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAGACATCAATGCTTATGAGEST: gi|211349701|gb|FL449949.1|FL449949
genomic: AGATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAGACATCAATGCTTATGAGEST: gi|13198326|gb|BG354265.1|BG354265
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAGACATCAATGCTTATGAEST: gi|19058136|gb|BM736803.1|BM736803
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGA
EST: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAGACATCAATGCTTATGAGEST: gi|6342692|gb|AW165516.1|AW165516
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAG-CATCAATGCTTATGAGEST: gi|13249748|gb|BG360653.1|BG360653
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCT-GGAA-AAG GTTCTCTTCTCAGACATCAATGCTTATGAGEST: gi|6431818|gb|AW172022.1|AW172022
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: ATTCTATCGATCGGTGCTGAAGTCAGNGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAGACATCAATGCTTATGAGEST: gi|211485848|gb|FK973440.1|FK973440
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
ttaccgtagtacaatgctcataatgtagaatactgtaaccagtttgcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
ctgtaac putative branch site (score: 302)
ataatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattcttacagtttgcatagtttgttgaatgtacttttacttttaccgtagtacaatgctcataatgtagaatactgtaaccagtttgcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
- - - - - - - tttgcat
- - - - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctc