Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgaggaatatattaaagctaaccagttatgtatggattgttaagtttttaattgttgatgctattatttaatcttctctttgcttgtaatgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT

Basic information

species Zea mays
transcript GRMZM2G050925_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050925_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 3'ss of exon 3
----actgag--gaatatattaaagctaaccagttatgtatggattgttaagtttttaattgttgatgctattatttaatcttctctttgcttgtaatgtatgtagGGGCCCTGGTCGTTTTGAAG---ACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT
      |||   |  |   || ||| ||| | |||   ||    ||  | | ||  |    | |||| ||||     | | ||   | |  |||  ||||||||||||||||   ||| |||||||   |||| ||||||||||| ||||| |||| |||||||||||| |||||||||||||| |||||||||||||| || |||   
atgtgttgatgtggtttggtttaagttaatctgtt-catagtctttcctgatttaatggaggctgattctat-----actgttgattctctttgcgatgtatgtagGGGCCCGCCTCGCTTTGAAGGGGACAGGCCAAGGTTTGGTGACAGAGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGTGAGAAG---

upper sequence: GRMZM2G050925_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 3'ss of exon 3
-actgaggaatatattaaag--ctaaccagttatgtatggattgtta-agtttttaattgttgatgctattatttaatcttctctttgcttgtaatgtatgtagGGGCCCTGGTCGTTTTGAAG---ACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT
 ||||||| |||| |  | |  ||    | || |  |   | |||   | | |||  | ||||  | |  |   | || |    ||  | ||| |||| | |||||||||   ||| || ||||   |||||||||||||||||||| ||||||  ||||||||||| ||||||||||| || ||||| |||||||| || |||   
aactgaggcatatctgcatgttctgttgaattcttgagctactgtggcaatattttctagttgtcgtt--tggctgatttctgatt--cctgtgatgtgtttagGGGCCCACCTCGGTTCGAAGGGGACAGACCAAGGTTTGGAGACCGGGATGGCTACCGTGGTGGACCTCGTGGTGCGCCTGGTGATTTTGGTGGTGAGAAG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18171697|gb|BM341537.1|BM341537
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18163083|gb|BM332922.1|BM332922
EST:     GGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: GGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|4730762|gb|AI649928.1|AI649928
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|4835089|gb|AI670315.1|AI670315
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|28576004|gb|CB281896.1|CB281896
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGCCGTTCTGAAGACAGACCAAGGCTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|76020050|gb|DT947220.1|DT947220
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18171715|gb|BM341555.1|BM341555
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|33097341|gb|CF057301.1|CF057301
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|22552651|gb|BU102490.1|BU102490
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|86473688|gb|DY240058.1|DY240058
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|211448197|gb|FL410300.1|FL410300
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAA-ACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18170762|gb|BM340602.1|BM340602
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|45846784|gb|CN070727.1|CN070727
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|4827599|gb|AI668291.1|AI668291
EST:     AGGCCCCTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|93016864|gb|EB642384.1|EB642384
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|16922977|gb|BM075969.1|BM075969
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17931964|gb|BM268924.1|BM268924
EST:     CCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: CCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18172687|gb|BM348075.1|BM348075
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|32807051|gb|CD959285.1|CD959285
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|32807428|gb|CD959662.1|CD959662
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17930723|gb|BM267683.1|BM267683
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCATGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|32824632|gb|CD964354.1|CD964354
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|20301451|gb|BQ164394.1|BQ164394
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|22542952|gb|BU093390.1|BU093390
EST:     AGGCCACTGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGAACAGACCAAGG
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGA-CAGACCAAGG
EST: gi|17929388|gb|BM266348.1|BM266348
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|78082395|gb|DV510807.1|DV510807
EST:     AGGCCACTGGGCCGTCCATTTGGCTTTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18165131|gb|BM334970.1|BM334970
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|78074399|gb|DV502833.1|DV502833
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|211021976|gb|FL373954.1|FL373954
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18170409|gb|BM340249.1|BM340249
EST:     TGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: TGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|78082396|gb|DV510808.1|DV510808
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18169018|gb|BM338858.1|BM338858
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|211501497|gb|FL028061.1|FL028061
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18164707|gb|BM334546.1|BM334546
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18175566|gb|BM350835.1|BM350835
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|94475894|gb|EB704852.1|EB704852
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18169112|gb|BM338952.1|BM338952
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17932219|gb|BM269179.1|BM269179
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18161950|gb|BM331789.1|BM331789
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|22935805|gb|BU572080.1|BU572080
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|21626013|gb|BQ620934.1|BQ620934
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17931578|gb|BM268538.1|BM268538
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|94475893|gb|EB704851.1|EB704851
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|71439852|gb|DR820902.1|DR820902
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|50328582|gb|CO523708.1|CO523708
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|31358616|gb|CD442973.1|CD442973
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17931080|gb|BM268040.1|BM268040
EST:     TCCATTTGGCTCTGGCCCTCATGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: TCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|33101552|gb|CF061512.1|CF061512
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|91056101|gb|EB166519.1|EB166519
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|148995686|gb|EE034906.2|EE034906
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18166778|gb|BM336617.1|BM336617
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18175130|gb|BM350518.1|BM350518
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|78026413|gb|DV494800.1|DV494800
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|93016865|gb|EB642385.1|EB642385
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|32807844|gb|CD960078.1|CD960078
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|120480896|gb|EH211080.1|EH211080
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|211321903|gb|FL420982.1|FL420982
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18169065|gb|BM338905.1|BM338905
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|32917369|gb|CF022181.1|CF022181
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17929591|gb|BM266551.1|BM266551
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTAAAGACAGACCAAGGTTTGGAGACAGGAATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|22935565|gb|BU571840.1|BU571840
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|67017839|gb|CO446588.1|CO446588
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|60345271|gb|DN212244.1|DN212244
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|211366018|gb|FL393816.1|FL393816
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|4572739|gb|AI586388.1|AI586388
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18170757|gb|BM340597.1|BM340597
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|16922610|gb|BM075651.1|BM075651
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18170812|gb|BM340652.1|BM340652
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|18167200|gb|BM337039.1|BM337039
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
EST: gi|17931343|gb|BM268309.1|BM268309
EST:     AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA
genomic: AGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1663

ACCTGAACCTCCCGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 1042

ACCTGAACCTCCCGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 712

ACCTGAACCTCCCGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 783

ACCTGAACCTCCCGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAGGCCACTGGGCCGTCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaagccta ... atgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttaattgttgatgctattatttaatcttctctttgcttgtaatgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT
                  tattatttaatcttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgaggaatatattaaagctaaccagttatgtatggattgttaagtttttaattgttgatgctattatttaatcttctctttgcttgtaatgtatgtagGGGCCCTGGTCGTTTTGAAGACAGACCAAGGTTTGGAGACAGGGATGAGTACCGTGGTGGCCCTCGTGGTGCTCCCGGTGACTTTGGTGGCGATAAGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - -ctaacca
- - - - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct