1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtcctggtatccttatctttcagtatgttttgatcctgttacatccatgcaaaagttcttgtgttattcttagctgtttttcttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG
species | Zea mays |
transcript | GRMZM2G050658_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCEST: gi|148968163|gb|EE019452.2|EE019452
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGC
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAEST: gi|149072274|gb|EE160530.2|EE160530
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAEST: gi|211132095|gb|FL293579.1|FL293579
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAEST: gi|149074580|gb|EE162983.2|EE162983
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAEST: gi|211132097|gb|FL293581.1|FL293581
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAEST: gi|76923126|gb|DV169343.1|DV169343
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAEST: gi|148997626|gb|EE035845.2|EE035845
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTTGGATTTACTTCAAA
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAA
gttacatccatgcaaaagttcttgtgttattcttagctgtttttcttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG
ctgtttttcttattt CT-rich tract
tttttcttatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctggtatccttatctttcagtatgttttgatcctgttacatccatgcaaaagttcttgtgttattcttagctgtttttcttatttgtagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGGATTTACTTCAAAAAGAAGAATTTTTATGATTTGCACCATGGCATACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG