1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcccatccagggaaatgattgttactgttttgtttgcttctggctattgggtaggtaattaatgtgacaatggtcttcgttgttggattttgaatcgcagGAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGTGATAGGGAGTGGGGAGAAGCAACCAAAAGCCTGCAACACAAATTACGAA
species | Zea mays |
transcript | GRMZM2G050495_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTTCACTTGGGGGCTCTCTTCGGATTTGATAAAGACGCCAG GAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGTEST: gi|149094660|gb|EE180203.2|EE180203
genomic: GCATTTCACTTTGGGGCTCTCTTCGGATTTGATAAAGACGCCAGgtcttgtcat ... tgaatcgcagGAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGT
EST: GCTATGGCATTTCACTTTGGGGCTCTCTTCGGATTTGATAAAGACGCCAG GAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGT
genomic: GCTATGGCATTTCACTTTGGGGCTCTCTTCGGATTTGATAAAGACGCCAGgtcttgtcat ... tgaatcgcagGAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGT
attgggtaggtaattaatgtgacaatggtcttcgttgttggattttgaatcgcagGAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGTGATAGGGAGTGGGGAGAAGCAACCAAAAGCCTGCAACACAAATTACGAA
aattaat putative branch site (score: 3)
taattaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccatccagggaaatgattgttactgttttgtttgcttctggctattgggtaggtaattaatgtgacaatggtcttcgttgttggattttgaatcgcagGAGACGGCTCCACATGATGATCAATAATCATCCCACTGTATCTGAAGTTGTGATAGGGAGTGGGGAGAAGCAACCAAAAGCCTGCAACACAAATTACGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- ccatcca
- - - - - - - - - -tgttact
- - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - - - - - - gctattg