Sequence
atgc intronic sequence ATGC exonic sequencegttcataccccactgttttggttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctacctgtcttgcaatgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G050405_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G20970.2 (Glycine max), 3'ss of exon 4
gttcataccccactgtt--ttggttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctac------ctgtcttgcaatgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
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atttaaaaatctttaaagatagagtacatgaaaat-taaatttattttacaatgcttactctcgggcacactttcttacaatattcactttatttatatagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCAC
upper sequence: GRMZM2G050405_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G09440.1 (Glycine max), 3'ss of exon 4
-gttcataccccactgttttggttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctacctgtcttgcaatgc-------agAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACT-TCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
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tttttatacttaaaatacatgaaaat-taaacttatttgacaaattgaagcttattacttttgggcccactttcttgtcacactcaaattattttttatagAGGTTGGTTTATGGAGCGAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTATGATTTCAGATGCATTGCGAGGTACTGGATTCTATCAGAAAGCA-
upper sequence: GRMZM2G050405_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G22830.1 (Glycine max), 3'ss of exon 8
gttcataccccactgtt--ttggttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctac------ctgtcttgcaatgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
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atttaaaaatctttaaagatagagtacatgaaaat-taaattcattttacaatgcttactctcgggcacattttcttacaatattcactttatttatatagAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCAC
upper sequence: GRMZM2G050405_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G12900.1 (Glycine max), 3'ss of exon 2
------gttcataccccactgttttg-gttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctacctgtcttgca---atgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
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atttaagataatttctaattaattaatattacatcaaa--attgaattattttacaatgattacttttgggcacacttttttaca-atattaaatttatacagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTAGGTTCGATGACTTCATTTCAGATGCATTGCGAGGTACTGCATTCTATCAGAAGGCAC
upper sequence: GRMZM2G050405_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA17G04720.2 (Glycine max), 3'ss of exon 4
gttcataccccactgttttggttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctacctgtcttgcaatgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
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gttagaatggc-ttgttatccctatgtgtctcttttataccatgtttatcctgtttctagctaacttattacattattctttttctaa--cagAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAA
upper sequence: GRMZM2G050405_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G09430.2 (Glycine max), 3'ss of exon 3
------gttcataccccactgttttg-gttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctacctgtcttgca---atgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
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atttaagataatttctaattaattaatattacatcaaa--attgaattattttacaatgattacttttgggcacgctttcttaca-atattaaatttatacagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGGTTCGATGACTTCATTTCAGATGCATTGCGAGGTACTGGATTCTATCAGAAGGCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacaactagaaattatcgaatcatgtctaactttcctacctgtcttgcaatgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
gtctaac putative branch site (score: 2)
ctttcctacctgtctt CT-rich tract
tagaaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcataccccactgttttggttgcctaaactcataggcacaactagaaattatcgaatcatgtctaactttcctacctgtcttgcaatgcagAGGCTGGTTTATGGGGCCAAGGTAGAGTCTGCCATTGCCATTGGATTCGATGACTTCATTGCAGATGCTCTGAGAGGCATTGGGTTCTACCAGAAGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG