1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgggcctggccattcaggaattctggtttttgggttccgcacttgtgttgattttacaaatttactacagcctaaccatctaatcactatgttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA
species | Zea mays |
transcript | GRMZM2G050325_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|18171147|gb|BM340987.1|BM340987
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|71317982|gb|DR795750.1|DR795750
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|50338931|gb|CO534057.1|CO534057
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|74239407|gb|DT647321.1|DT647321
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|94477663|gb|EB706621.1|EB706621
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|71775486|gb|DR973364.1|DR973364
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|60356851|gb|DN223824.1|DN223824
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|50331530|gb|CO526656.1|CO526656
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGNNNNNNNNGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|148986829|gb|EE030628.2|EE030628
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTACCACCTTACTGGGGTGGGEST: gi|37375249|gb|CF624050.1|CF624050
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|37384216|gb|CF629166.1|CF629166
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|211213647|gb|FL457806.1|FL457806
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|37376720|gb|CF624915.1|CF624915
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|9254288|gb|BE344756.1|BE344756
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: CTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|149097405|gb|EE183258.2|EE183258
genomic: CTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGNCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|50331531|gb|CO526657.1|CO526657
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|93015163|gb|EB640683.1|EB640683
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|33099705|gb|CF059665.1|CF059665
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|44901068|gb|CK827613.1|CK827613
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|78119655|gb|DV538039.1|DV538039
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGEST: gi|113701518|gb|EE679022.1|EE679022
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
EST: GCTACGACTTCTTCACGCGNNNNNNNNGCCCAAAATTTGGAATAGATGAG GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
tgttgattttacaaatttactacagcctaaccatctaatcactatgttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA
attttacaaatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggcctggccattcaggaattctggtttttgggttccgcacttgtgttgattttacaaatttactacagcctaaccatctaatcactatgttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG