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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaaattgattattcatgttattttattatgtttcatcgtcaacttttggaatattttgtccttttgcaatttcggtttcctaaaaccctccttttcagCTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGGCATTGAGCCCCAGAATATTTTCTGAGGTGAATAAATTCAAGCCGGACATAATCCATGCC

Basic information

species Zea mays
transcript GRMZM2G049190_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049190_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 3'ss of exon 3
-ctgaaattgattattcatgttattttattatgtttcatcgtcaacttttggaatattttgtccttttgcaatttcggtttcctaaaaccctccttttcagCTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGGCATTGAGCCCCAGAATATTTTCTGAGGTGAATAAATTCAAGCCGGACATAATCCATGCC
   |   |  | |||  || || ||  |  |   |  |        | ||| ||| | || |   |        |   || ||||||   ||  || |||| |||||||||||  | |||||||||||||||||||||||||| |||||||| || |||||||| | ||||  |||||| |||||||||||||||||||| 
caagtcgtcaagtatatatatt-ttagaggacactagaattcttcttgttgaaatttcttctatctgcatgcacttaattgcctaaatttctatttctcagTTTTCCATGTCCGTTATACCAAAATGTTCCACTCTCGCTGGCGTTGAGCCCTAGGATATTTTCGGCGGTGGCTAAATTTAAGCCGGACATAATCCATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71300882|gb|DR786472.1|DR786472
EST:     AAGGGAGCCCCTGAGGAGTTCCATGGAGCAAAGGTCATTGGCTCGTGGAG                         CTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGGCATTGAGCCC
genomic: AAGGGAGCCCCTGAGGAGTTCCATGGAGCAAAGGTCATTGGCTCGTGGAGgtaatctgca ... tccttttcagCTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGGCATTGAGCCC
EST: gi|78113851|gb|DV532240.1|DV532240
EST:     AAGGGAGCCCCTGAGGAGTTCCATGGAGCAAAGGTCATTGGCTCGTGGAG                         CTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGGGCATTGAGCC
genomic: AAGGGAGCCCCTGAGGAGTTCCATGGAGCAAAGGTCATTGGCTCGTGGAGgtaatctgca ... tccttttcagCTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGG-CATTGAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggaatattttgtccttttgcaatttcggtttcctaaaaccctccttttcagCTTTCCATGTCCTCTGTACCAAAATGTTCCACTCTCGCTGGCATTGAGCCCCAGAATATTTTCTGAGGTGAATAAATTCAAGCCGGACATAATCCATGCC
                                  tcctaaa  putative branch site (score: 2)
                                          ccctccttttc  CT-rich tract
      aatattttgt  TA-rich tract