Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttctgaatgtggcattctctgtcgtctctctgtctacatgtacgatgtctgtccatgttgcaaatggttaatggtttttaattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG

Basic information

species Zea mays
transcript GRMZM2G048703_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048703_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------------gtattgttctgaatgtggcattctct----gtcgtctctctgtctaca----------tgtacgatgtctgtccatg--ttgcaaatggtt--aatgg--tttttaattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG
                                                     | || |||   || |  || |  ||     |    |   | ||| ||          |||| ||  |    || |   |||    |      ||||   ||| | ||  | |||||| |||| ||    |||||||| ||||||||||||||||||||||| |  || |||||||| || ||||| ||| ||
gtaaacatttgaatctttctgtgcattttctttcttgtctaattaatgatattttttattccttatttttcacttcctttttattacataattatcttcagaagctaaaatgtatgaaattcaaccctagattgtggttaacctgaatgaaatttcttatgtgtcagGATTCTGCTAATTGCAATGGTGGTAAGTGGATAATTAGATTCAAAAAAGTCGTGTCAGGTCGCTTCTGGGAAGATCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211257254|gb|FK964960.1|FK964960
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118686|gb|FK964926.1|FK964926
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|89760551|gb|DY688915.1|DY688915
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|16917882|gb|BM073472.1|BM073472
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119484|gb|FK964938.1|FK964938
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|148936054|gb|EC880114.2|EC880114
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|87153049|gb|DY397838.1|DY397838
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|6445424|gb|AW179492.1|AW179492
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119483|gb|FK964937.1|FK964937
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|18180251|gb|BM381461.1|BM381461
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254819|gb|FK964954.1|FK964954
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGAYTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211257255|gb|FK964961.1|FK964961
EST:     CCCCACTGACCTTCATCCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCW
genomic: CCCCACTGACCTTCATC-TCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|74232667|gb|DT640581.1|DT640581
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119482|gb|FK964936.1|FK964936
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCA
EST: gi|211254812|gb|FK964947.1|FK964947
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|28361610|gb|CB239966.1|CB239966
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|93012199|gb|EB637719.1|EB637719
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254818|gb|FK964953.1|FK964953
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|31612425|gb|CD569047.1|CD569047
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|71327672|gb|DR800450.1|DR800450
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|91053786|gb|EB164204.1|EB164204
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|14245305|gb|BG873887.1|BG873887
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118679|gb|FK964919.1|FK964919
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254811|gb|FK964946.1|FK964946
EST:     CCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCACTCTGGGAG                         GATCCTGCAAACCAGAATGGAGGCCAGTGGATAATTAGATTCATAA-GGC
genomic: CCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCC-CTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGC
EST: gi|74232666|gb|DT640580.1|DT640580
EST:     GCCCCACTGACCTTCATCTTTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|19058335|gb|BM737002.1|BM737002
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119478|gb|FK964932.1|FK964932
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATC-GTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCMAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|60351308|gb|DN218281.1|DN218281
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118683|gb|FK964923.1|FK964923
EST:     CCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: CCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCC-TCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254809|gb|FK964944.1|FK964944
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211257253|gb|FK964959.1|FK964959
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCA
EST: gi|5499467|gb|AI855334.1|AI855334
EST:     GCCCCACTGGCCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119488|gb|FK964942.1|FK964942
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|78088649|gb|DV517042.1|DV517042
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119485|gb|FK964939.1|FK964939
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254822|gb|FK964957.1|FK964957
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254814|gb|FK964949.1|FK964949
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118682|gb|FK964922.1|FK964922
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGC
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGC
EST: gi|78088650|gb|DV517043.1|DV517043
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119477|gb|FK964931.1|FK964931
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|31349975|gb|CD434332.1|CD434332
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119481|gb|FK964935.1|FK964935
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119487|gb|FK964941.1|FK964941
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGC-
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118677|gb|FK964917.1|FK964917
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTNGGGCA-GTGGATAATTAGATTCAAAAAGG
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGT-GG-CAAGTGGATAATTAGATTCAAAAAGG
EST: gi|28361792|gb|CB240148.1|CB240148
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|15199121|gb|BI423668.1|BI423668
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|149070116|gb|EE158515.2|EE158515
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119476|gb|FK964930.1|FK964930
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211254808|gb|FK964943.1|FK964943
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118676|gb|FK964916.1|FK964916
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|89760553|gb|DY688916.1|DY688916
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|149005273|gb|EE039821.2|EE039821
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211119474|gb|FK964928.1|FK964928
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGC
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGC
EST: gi|211257252|gb|FK964958.1|FK964958
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118680|gb|FK964920.1|FK964920
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCAGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTG
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTG
EST: gi|211118681|gb|FK964921.1|FK964921
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCGAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|8368073|gb|BE051018.1|BE051018
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|31612426|gb|CD569048.1|CD569048
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|32834070|gb|CD973748.1|CD973748
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118685|gb|FK964925.1|FK964925
EST:     CCCCACTGACCTTCATCTCTTCAAGGACTGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGAGTAATTAGATTCAAAAAGGC
genomic: CCCCACTGACCTTCATCTCTTCAAGGA-TGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGA-TAATTAGATTCAAAAAGGC
EST: gi|22490736|gb|BU050659.1|BU050659
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
EST: gi|211118675|gb|FK964915.1|FK964915
EST:     GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGG-AG                         GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA
genomic: GCCCCACTGACCTTCATCTCTTCAAGGATGGCATCCGTCCCCTCTGGGAGgtattgttct ... aattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatgtacgatgtctgtccatgttgcaaatggttaatggtttttaattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG
                                         ttttaat  putative branch site (score: 3)
                                 ttaatggtttttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgttctgaatgtggcattctctgtcgtctctctgtctacatgtacgatgtctgtccatgttgcaaatggttaatggtttttaattggccagGATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT