1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cattcctttgagaaatattgatttcccttacctgttatattttctatagcattttctttttcaaatttagcttttgcttaataaaatttcattttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGATGACGTTGTGGCTGACGAAGATATGCGATATGAATCTGATGATAATCGTG
species | Zea mays |
transcript | GRMZM2G048494_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAACCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCAT AGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGATEST: gi|149041296|gb|EE046932.2|EE046932
genomic: ATGAACCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCATgtaagattca ... attttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGAT
EST: ATGAACCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCAT AGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGEST: gi|32823050|gb|CD962759.1|CD962759
genomic: ATGAACCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCATgtaagattca ... attttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATG
EST: TGAACCAGCTCCATATCGTGTTCGCCATGAAATCGGA-GAAGATTCTCAT AGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGATEST: gi|56691657|gb|CX129560.1|CX129560
genomic: TGAACCAGCTCCATATCGTGTTCGCCATGAAATCG-ATGAAGATTCTCATgtaagattca ... attttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGAT
EST: ATGAACCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCAT AGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGAT
genomic: ATGAACCAGCTCCATATCGTGTTCGCCATGAAATCGATGAAGATTCTCATgtaagattca ... attttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGAT
atagcattttctttttcaaatttagcttttgcttaataaaatttcattttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGATGACGTTGTGGCTGACGAAGATATGCGATATGAATCTGATGATAATCGTG
gcttaat putative branch site (score: 4)
tttcattttctt putative PPT
ttttgcttaataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattcctttgagaaatattgatttcccttacctgttatattttctatagcattttctttttcaaatttagcttttgcttaataaaatttcattttcttagAGGTCTCACATGGAGGATGAAGGCCATTATGAGAAGGACATGCAACCAGATGACGTTGTGGCTGACGAAGATATGCGATATGAATCTGATGATAATCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA