1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccgtcaatgctttgtgactgctgacgccgtccgcagtaatagctagacattgccatccatatttcttcttttgtaactcatgacgtcactttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTGCTGGTGCAGCGAAGGGTCTGGAGTACCTTCATGACAAGGCAAATCCACC
species | Zea mays |
transcript | GRMZM2G048210_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTG --C-AG--GCCAAG-AACCTCTTGACTGGAATACAAAGATGAAGATTGCTGEST: gi|89247678|gb|DY619464.1|DY619464
genomic: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgca ... ttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTG
EST: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTG GTCCAGCAGGCAAGGGACCTCTTGACTEST: gi|71311036|gb|DR791825.1|DR791825
genomic: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgca ... ttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACT
EST: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTG GTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTGEST: gi|76282773|gb|DV022341.1|DV022341
genomic: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgca ... ttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTG
EST: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTG --C-AG--G-CAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTGEST: gi|148970105|gb|EE021043.2|EE021043
genomic: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgca ... ttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTG
EST: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTG --C-AG--G-CAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTGEST: gi|149112504|gb|EE191352.2|EE191352
genomic: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgca ... ttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTG
EST: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTG GTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTG
genomic: CTTAGTTTACGAATACATGTTGTTGGGATCACTGGAAAATCGTCTGTTTGgtaagttgca ... ttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTG
gacattgccatccatatttcttcttttgtaactcatgacgtcactttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTGCTGGTGCAGCGAAGGGTCTGGAGTACCTTCATGACAAGGCAAATCCACC
ttgtaac putative branch site (score: 2)
tcactttctt putative PPT
atatttcttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgtcaatgctttgtgactgctgacgccgtccgcagtaatagctagacattgccatccatatttcttcttttgtaactcatgacgtcactttcttggtagGTCCAGCAGGCAAGGAACCTCTTGACTGGAATACAAGGATGAAGATTGCTGCTGGTGCAGCGAAGGGTCTGGAGTACCTTCATGACAAGGCAAATCCACC
- - -aatgctt
- - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgacg