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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaacattatcacagtgtgcaatttaatccacattgcttggtcacaactaagcactgattgcatttctctggtgcttggtcgctgcatttaagttttctacttctatgtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAGTAAGTGC

Basic information

species Zea mays
transcript GRMZM2G047894_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047894_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 3'ss of exon 3
gtaagtaaacatt-atca--cagtgtgcaatttaatccacattgcttggtcacaactaagcactgattgcatttctctggtgct--tggtcgctgcatttaagttttctacttctatgtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAGTAAGTGC
||| |  || ||| |  |   ||  | |||||| |||||||||| ||||          ||| || ||   ||| ||||||  |  ||||| | | ||   | |||     | | || |  ||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||  |||  | ||||| || |||||||||||||||||||| ||        
gtatgacaaaattgagtagttagcatccaattttatccacattgtttgg----------gcattgtttatctttatctggtatttttggtcacagtatcataatttgtgtatgccatcttattgcagAAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAA--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211511662|gb|FL408088.1|FL408088
EST:     TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA                         AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGA-TTGCAGAAAC
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAAC
EST: gi|211199436|gb|FL401716.1|FL401716
EST:     GAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGNAA                         AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTAC
genomic: GAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGG-AAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTAC
EST: gi|78086850|gb|DV515243.1|DV515243
EST:     TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA                         AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
EST: gi|211223965|gb|FL409228.1|FL409228
EST:     TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA                         AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATGG-AGAAACTACT
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
EST: gi|211285032|gb|FK988594.1|FK988594
EST:     TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA                         AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctctggtgcttggtcgctgcatttaagttttctacttctatgtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAGTAAGTGC
                        atttaagttttcta  TA-rich tract