Sequence
atgc intronic sequence ATGC exonic sequencegttatttttttatctgcgaaatctgcacgtgaaaacccgaactcgtcaatcattgtactaagtagcactttcatttctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACTGACAAGGATGAATGCGCATACCAGGAAATGGTTACTCACCTTCCACTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G047867_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g33710.1 (Oryza sativa), 3'ss of exon 4
-------------------gttatttttttatctgcgaaat----ctgcacgtgaaaacccgaactcgtcaatcattgtactaagtagcactttcatttctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACTGACAAGGATGAATGCGCATACCAGGAAATGGTTACTCACCTTCCACTGT
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gtcattcttcacctgctaggctagctgtgtgcatactacattactttatacataaacaactaattttgttgaactattttttgtataacctgtctatttctgtatgcagTCCTCAACCTATGGGAATGTTCTGGTGCTTGATGGTATTGTGCAGCTGACCGAAAAGGATGAATGTGCATACCAGGAAATGGTTACTCACCTTCCACTGT
upper sequence: GRMZM2G047867_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G41600.1 (Glycine max), 3'ss of exon 4
gttatttttttatctgcgaaatctgcacgtgaaaacccgaactcgtcaatcattgtactaagtagcactttcatttctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACTGACAAGGATGAATGCGCATACCAGGAAATGGTTACTCACCTTCCACTGT
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-------gtttggcctcttcatcttataatgt--actataactttaacgtgaaagggatagatgctaat--cctttcattttgcagTCATCAACTTATGGGAAAGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCT
upper sequence: GRMZM2G047867_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv16s0050g02670.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------gttatttttttatctgcgaaatctgcacgtgaaaacccgaactcgtcaatcat-tgtactaagtagcactttca----tttctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACTGACAAGGATGAATGCGCATACCAGGAAATGGTTACTCACCTTCCACTGT
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gttctgcattctgaactctaaatactagtgttgttcgaagttgacttagtttccattttttatctatctgtcatgttcttcttttctttcttctatattagctagctaatgcagattcttttatttgcagTCGTCAGCATATGGCAAAGTGCTTGTGCTTGATGGCATTGTTCAGTTGAGCGAGAAAGATGAATGTGCCTATCAGGAGATGATTGCTCACCTTCCCCTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71333307|gb|DR803710.1|DR803710EST: AGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAG TCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACT
genomic: AGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAGgttatttttt ... ctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACT
EST:
gi|32844200|gb|CD983881.1|CD983881EST: AGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAG TCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACT
genomic: AGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAGgttatttttt ... ctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaacccgaactcgtcaatcattgtactaagtagcactttcatttctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACTGACAAGGATGAATGCGCATACCAGGAAATGGTTACTCACCTTCCACTGT
ctttcatttctgttc CT-rich tract
tttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatttttttatctgcgaaatctgcacgtgaaaacccgaactcgtcaatcattgtactaagtagcactttcatttctgttcgcagTCTTCAACCTATGGAAATGTTCTTGTGCTTGATGGTATAGTTCAGTTGACTGACAAGGATGAATGCGCATACCAGGAAATGGTTACTCACCTTCCACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG