1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtacttgtgtatgtcaaaactattttccccctaaaaggctttaatggtcctacatattcaggaatcaggagtttgatcaacatcttttattatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAG
species | Zea mays |
transcript | GRMZM2G047867_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTCAATAACCCGATGTGGCCTG GAGAGGCTCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCEST: gi|71757237|gb|DR955174.1|DR955174
genomic: ACTTCAATAACCCGATGTGGCCTGgtatttctct ... ttatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG GAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCEST: gi|32919513|gb|CF024325.1|CF024325
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGgtatttctct ... ttatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG GAGAGGCTCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCEST: gi|24934961|gb|BQ619375.2|BQ619375
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGgtatttctct ... ttatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG GAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCEST: gi|88757557|gb|DY541698.1|DY541698
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGgtatttctct ... ttatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
EST: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTG GAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCEST: gi|32844200|gb|CD983881.1|CD983881
genomic: GTAAAACAAGCAAAGTGCAGTACTTCAATAACCCGATGTGGCCTGgtatttctct ... ttatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
EST: ACTTCAATAACCCGATGTGGCCTG GAGAGGCTCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
genomic: ACTTCAATAACCCGATGTGGCCTGgtatttctct ... ttatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGC
tggtcctacatattcaggaatcaggagtttgatcaacatcttttattatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAG
gtttgat putative branch site (score: 107)
tcttttatt putative PPT
atcaacatcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacttgtgtatgtcaaaactattttccccctaaaaggctttaatggtcctacatattcaggaatcaggagtttgatcaacatcttttattatttacagGAGAGGCCCATTCATTGAAAGTGGAGAAGATCTTGTTTCAAGGGAAATCGCCTTACCAAGAAATTTTAGTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -gtgtatg
- - - - - - - -caaaacta
- - - - - - - - - - - - - - - - - - - - - - -tggtcct