1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagagagcaccaatgtgctttagatcttgtggctatctgttcttatttcatgttttcaacttactatttgttatgtgataattatttattttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCCATAATGTCATGATAGATCACGAGCTTCGCAAACTTCGGTTGATAGACT
species | Zea mays |
transcript | GRMZM2G047855_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|67040594|gb|CO466849.1|CO466849
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|60357494|gb|DN224467.1|DN224467
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|148932884|gb|EE285654.2|EE285654
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|149039473|gb|EE046613.2|EE046613
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|87156044|gb|DY400833.1|DY400833
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|32839753|gb|CD979434.1|CD979434
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|32925412|gb|CF030224.1|CF030224
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|149104221|gb|EE289654.2|EE289654
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|149072883|gb|EE161139.2|EE161139
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATEST: gi|149097607|gb|EE183500.2|EE183500
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGAT
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCEST: gi|71446427|gb|DR827477.1|DR827477
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
EST: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAG GCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
genomic: CCACATTGACGGATTATGACATCCGCTACTACATATATGAGCTACTCAAGgtcacgattg ... ttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCC
tttcatgttttcaacttactatttgttatgtgataattatttattttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCCATAATGTCATGATAGATCACGAGCTTCGCAAACTTCGGTTGATAGACT
tttatttt CT-rich tract
aacttactatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagagcaccaatgtgctttagatcttgtggctatctgttcttatttcatgttttcaacttactatttgttatgtgataattatttattttaattccagGCTCTAGATTACTGCCATTCTCAAGGCATCATGCATCGAGATGTCAAGCCCCATAATGTCATGATAGATCACGAGCTTCGCAAACTTCGGTTGATAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - gcaccaa
- - - - - - -tgtgctt
- - - - - - - - - - - - - -tgtggct