Sequence
atgc intronic sequence ATGC exonic sequence...gaaattagtgatcttcgctaattttcaaatctcatttgctctcttgcctctcaggtatcgtgctcgactcgggagatggtgtcagccacactgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGGCCGCGACCTCACCGACTACCTCATGAAGATCCTGACTGAACGCGGCTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G047055_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g50885.1 (Oryza sativa), 3'ss of exon 2
------------------------------------------gaaattagtgat-cttcgctaattttcaaatctcatttgct---ctcttgcctctcaggtatcgtgctcgactcgggagatggtgtcagccacactgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGGCCGCGACCTCACCGACTACCTCATGAAGATCCTGACTGAACGCGGCTAC
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ataaatggaatcatgtttgaacatcctaattctgttggcatggagtgctttgacattttgatgtgctacagttgtgaataactgaatttccttttcccagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACTGTCCCCATCTATGAAGGATATGCTCTCCCCCATGCTATCCTTCGTCTCGACCTTGCTGGGCG----------------------------------------------
upper sequence: GRMZM2G047055_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 4
----------------------------------------------------------------------------------------------gaaattagtgatcttcgctaattttcaaatctcatttgc---------tctcttgcctctcaggtatcgtgctcgactcgggagatggtgtcagccacactgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGGCCGCGACCTCACCGACTACCTCATGAAGATCCTGACTGAACGCGGCTAC
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gtgagtgatgggagaaggggtgaggtgaatgcagcatgtgcgttggttgcgaaagtggtggaggtgtgtggagaggtggggtgtttgacatgggaaggtttgtgggtcggggtaagaaactgagagcagttgtggtgatgaatgcaatgcaatgcagGTATCGTGCTGGACAGTGGAGATGGTGTGACCCACACGGTGCCAATCTACGAGGGTTACGCACTGCCTCACGCCATATTGCGATTAGACTTGGCGGGTCG----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211074261|gb|FL177903.1|FL177903EST: AGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACC CTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGG
genomic: AGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACCctcaagtacc ... ctgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcctctcaggtatcgtgctcgactcgggagatggtgtcagccacactgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGGCCGCGACCTCACCGACTACCTCATGAAGATCCTGACTGAACGCGGCTAC
ctgtcccc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaattagtgatcttcgctaattttcaaatctcatttgctctcttgcctctcaggtatcgtgctcgactcgggagatggtgtcagccacactgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGGCCGCGACCTCACCGACTACCTCATGAAGATCCTGACTGAACGCGGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagccac