1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catctgatagtccgcacttacgatgttattactgttggcctctaaggacaaactaccagttgcttgatttatctctatgttcaatacttcaacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAAATGCGAACCCTTTCAGCGATCATAACAACGCTGTTTCAGTGACGACGC
species | Zea mays |
transcript | GRMZM2G046418_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAG GTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAEST: gi|29544381|gb|CB604761.1|CB604761
genomic: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaact ... aacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGA
EST: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAG GTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAEST: gi|211395003|gb|FL034010.1|FL034010
genomic: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaact ... aacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGA
EST: TCGATGGCATAGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAG GTCCGCCGAGTTCAGTCCCTTGTG
genomic: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaact ... aacatgtcagGTCCGCCGAGTCCAGTCCCTTGTG
ggacaaactaccagttgcttgatttatctctatgttcaatacttcaacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAAATGCGAACCCTTTCAGCGATCATAACAACGCTGTTTCAGTGACGACGC
gcttgat putative branch site (score: 55)
ttgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctgatagtccgcacttacgatgttattactgttggcctctaaggacaaactaccagttgcttgatttatctctatgttcaatacttcaacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAAATGCGAACCCTTTCAGCGATCATAACAACGCTGTTTCAGTGACGACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT