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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acataaataatttggtaaaacttcatctattcttgctggtctccagcagaactatacccatcgtctcaagtgcttatttgttttcatgatatgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTGTTTCTTCATGGGTTGGTTCAACCATCTTCTGGGTGGGAGAGTGGTTTAT

Basic information

species Zea mays
transcript GRMZM2G046098_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046098_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g64780.2 (Oryza sativa), 3'ss of exon 3
------acataaataatttggtaaaacttcatctattcttgctggtctccagcagaactatacccatcgtctcaagtgcttatttgttttcatgatatgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTGTTTCTTCATGGGTTGGTTCAACCATCTTCTGGGTGGGAGAGTGGTTTAT
        | | || | | | ||   ||     ||||  |  |   | |||     | | ||    | ||  ||||||||||||  | ||   |  |  | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||
agtttgctaaagatgaatcg-tatgtctgatattatttctctttaccaccaaatccattttatgt-ttgtggcaagtgcttattattgtt---ggcac-actgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTGTTTCCTCATGGGTGGGTTCAACCATCTTTTGGGTTGGAGAATGGTTTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51871157|gb|CV126041.1|CV126041
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|51871146|gb|CV126030.1|CV126030
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|211391866|gb|FL013594.1|FL013594
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|50336995|gb|CO532121.1|CO532121
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|91053372|gb|EB163790.1|EB163790
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|50323815|gb|CO518941.1|CO518941
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|88755429|gb|DY539570.1|DY539570
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|42491828|gb|CK700874.1|CK700874
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|74239462|gb|DT647376.1|DT647376
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|60398318|gb|DN231134.1|DN231134
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTTTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|28910665|gb|CB331552.1|CB331552
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|76293651|gb|DV033219.1|DV033219
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|42491878|gb|CK700924.1|CK700924
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|148944675|gb|EC889811.2|EC889811
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|40287192|gb|CK327584.1|CK327584
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAANTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|148949550|gb|EC895017.2|EC895017
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagaactatacccatcgtctcaagtgcttatttgttttcatgatatgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTGTTTCTTCATGGGTTGGTTCAACCATCTTCTGGGTGGGAGAGTGGTTTAT
                            ttatttgttttcat  TA-rich tract