1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcggtcacctgtcacctcctcgcctcctttggaaacggagtccatgacaactgaacacgcatacttgagagctagcaatagcatcgtcttcttcttcgtagaccatgggccagaaacttgagctcactgttgcatggtactgcagGCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAACCCGAGCTGCGGCAACCGTTGGAGAGAATAATGGACGGTTCCTCTGGCGC
species | Zea mays |
transcript | GRMZM2G046061_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCCGTGCGCTGCTCCTCCTGCGGCCACGGCGAGGCNGTCTTCTTCCAG GCCACTGCGAGAGGGGWGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAAEST: gi|211445287|gb|FL147048.1|FL147048
genomic: AGTCCGTGCGTTGCTCCTCCTGCGGCCACGGCGAGGCCGTCTTCTTCCAGgtcggtcacc ... ggtactgcagGCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAA
EST: AGTCCGTGCGTTGCTCCTCYTGCGGCCACGGCGAGGCCGTCTTCTTCCAG GCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGEST: gi|211445288|gb|FL147049.1|FL147049
genomic: AGTCCGTGCGTTGCTCCTCCTGCGGCCACGGCGAGGCCGTCTTCTTCCAGgtcggtcacc ... ggtactgcagGCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTG
EST: AGTCCGTGCGCTGCTCCTCCTGCGGCCACGGCGAGGCYGTCTTCTTCCAG GCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAACEST: gi|211445284|gb|FL147045.1|FL147045
genomic: AGTCCGTGCGTTGCTCCTCCTGCGGCCACGGCGAGGCCGTCTTCTTCCAGgtcggtcacc ... ggtactgcagGCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAAC
EST: AGTCCGTGCGCTGCTCCTCCTGCGGCCACGGCGARGCCGTCTTCTTCCAG GCCACTGCGAGATGGGAGGAA
genomic: AGTCCGTGCGTTGCTCCTCCTGCGGCCACGGCGAGGCCGTCTTCTTCCAGgtcggtcacc ... ggtactgcagGCCACTGCGAGAGGGGAGGAA
cttcttcgtagaccatgggccagaaacttgagctcactgttgcatggtactgcagGCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAACCCGAGCTGCGGCAACCGTTGGAGAGAATAATGGACGGTTCCTCTGGCGC
agctcac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtcacctgtcacctcctcgcctcctttggaaacggagtccatgacaactgaacacgcatacttgagagctagcaatagcatcgtcttcttcttcgtagaccatgggccagaaacttgagctcactgttgcatggtactgcagGCCACTGCGAGAGGGGAGGAAGGGATGACGCTCTTCTTCGTCTGCTGCAACCCGAGCTGCGGCAACCGTTGGAGAGAATAATGGACGGTTCCTCTGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA