1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctctcttctacacctggttcttattttttattcctgctagacatgttacttgatctgatgtcttttttttatcttggttaatatttgcaatgctaacagGTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTTGTCTTGTCTGAAAGTTTTGGGCATTCCGTATTCAAGGATTCTTTCAAAC
species | Zea mays |
transcript | GRMZM2G045987_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTCAGTCAAGGTCACGTGTTAGATGTTTTTGCTTCTGCTCTCGATCAG GTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTTEST: gi|26456487|gb|CA828070.1|CA828070
genomic: TGGTCAGTCAAGGTCACGTGTTAGATGTTTTTGCTTCTGCTCTCGATCAGgtttgtttag ... atgctaacagGTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTT
EST: TGGTCAGTCAAGGTCACGTGTTAGATGTTTTTGCTTCTGCTCTCGATCAG GTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTT
genomic: TGGTCAGTCAAGGTCACGTGTTAGATGTTTTTGCTTCTGCTCTCGATCAGgtttgtttag ... atgctaacagGTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTT
gttacttgatctgatgtcttttttttatcttggttaatatttgcaatgctaacagGTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTTGTCTTGTCTGAAAGTTTTGGGCATTCCGTATTCAAGGATTCTTTCAAAC
ggttaat putative branch site (score: 447)
ttttttttatcttggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctcttctacacctggttcttattttttattcctgctagacatgttacttgatctgatgtcttttttttatcttggttaatatttgcaatgctaacagGTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTTGTCTTGTCTGAAAGTTTTGGGCATTCCGTATTCAAGGATTCTTTCAAAC
- - - - ctacacc
- - - - - - - -tggttct
- - - - - - - - - - - - - - - - -cctgcta
- - - - - - - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atttgca