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gtatggtgctcggccatgggggagggggctcttctttgtggctgcgcctaacactggttgatgcaacgtgcactgaattggttctggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAGATCGGCGTTACAAGAACCGGGAGCTGCAACTTATGCGTGCCATGGAGC
species | Zea mays |
transcript | GRMZM2G045330_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464982|gb|FL214406.1|FL214406
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464984|gb|FL214408.1|FL214408
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211462452|gb|FL214394.1|FL214394
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211462450|gb|FL214392.1|FL214392
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464973|gb|FL214397.1|FL214397
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464986|gb|FL214410.1|FL214410
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464978|gb|FL214402.1|FL214402
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|148936144|gb|EC880210.2|EC880210
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464987|gb|FL214411.1|FL214411
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|148955335|gb|EC900888.2|EC900888
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211462449|gb|FL214391.1|FL214391
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|71433254|gb|DR814304.1|DR814304
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464979|gb|FL214403.1|FL214403
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211462451|gb|FL214393.1|FL214393
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211467508|gb|FL214417.1|FL214417
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCACCATCAATAAGGTGCTGCAAEST: gi|211462444|gb|FL214386.1|FL214386
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|148971177|gb|EE022031.2|EE022031
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211467504|gb|FL214413.1|FL214413
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAEST: gi|211464985|gb|FL214409.1|FL214409
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
EST: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
genomic: ACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgctcggccatgggggagggggctcttctttgtggctgcgcctaacactggttgatgcaacgtgcactgaattggttctggcatgtagGCTAAGTGTCTGGAAACAGGAGAGACCTTCGCCATCAAGAAGGTGCTGCAAGATCGGCGTTACAAGAACCGGGAGCTGCAACTTATGCGTGCCATGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA