1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcgccctgcatgcagcaattttctgaccgtgcgtgcgtattttatctgctccattccatcaacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCCGTGACCGTCGTCAAGTCGAAGTAGTGGCTCTGGCCTTTCATTTCCAGA
species | Zea mays |
transcript | GRMZM2G045278_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGATGGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCEST: gi|50337518|gb|CO532644.1|CO532644
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
EST: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCEST: gi|101383316|gb|EB813714.1|EB813714
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
EST: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTTTGTTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCEST: gi|87154532|gb|DY399321.1|DY399321
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
EST: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCEST: gi|26454905|gb|CA826488.1|CA826488
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
EST: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCEST: gi|21329933|gb|BQ485314.1|BQ485314
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
EST: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCEST: gi|87154904|gb|DY399693.1|DY399693
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
EST: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAG GATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
genomic: CAGATCGAGTCGCTCGTCATGGGCAGCCGCGGCCTCGGCCAGATCCAAAGgtacgcgccc ... caacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCC
gcaattttctgaccgtgcgtgcgtattttatctgctccattccatcaacctgcagGATTCTGCTGGGAAGTGTGACGAACTACGTGCTGTCCAATGCGTCATGCCCCGTGACCGTCGTCAAGTCGAAGTAGTGGCTCTGGCCTTTCATTTCCAGA
ttctgac putative branch site (score: 38)
ttccatc putative PPT
tattttatct TA-rich tract