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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttagGTATCGGGCTCCAGAGGTTCTACTGCAATCTTCAGTTTATACACCTGCTATTG

Basic information

species Zea mays
transcript GRMZM2G045241_T07
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T07 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 3'ss of exon 7
gtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttagGTATCGGGCTCCAGAGGTTCTACTGCAATCTTCAGTTTATACACCTGCTATTG
|| ||||||||  | |||||||   | ||| | |       |||| | ||  | |||  ||||  |  ||  |  | ||  |  |||||||| ||||||||||| || || ||||| |||| ||| |||||||||||||
gtgagtttgtgtttcaaatttatc-tctgtataaccagtgaatatgtatacaccactttatccaaattattgtgaa-atggtgaagGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttagGTATCGGGCTCCAGAGGTTCTACTGCAATCTTCAGTTTATACACCTGCTATTG
                      aactaaa  putative branch site (score: 2)
                                             tattcttt  putative PPT
     taatgatatatttat  TA-rich tract