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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT

Basic information

species Zea mays
transcript GRMZM2G045241_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 3'ss of exon 2
gtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttctta-cagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT
|| || ||||| |     |  |   |  || | |   | |  ||     | | ||    | |  | ||  |||||||  |||||||||| ||||| || ||||||| ||||| ||||||||||||||||||| ||||| |||    ||||| |||||||||
gtcagcagtaattatc--tcgcgaatcatattatttgttgcgtgcgcactaatttctgacatggcatctaatttcttctcagGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76294031|gb|DV033599.1|DV033599
EST:     TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG                         GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
genomic: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
EST: gi|166421745|gb|EG232073.1|EG232073
EST:     CAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG                         GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
genomic: CAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactttagatggtctggaaggttaatttgacctttacttcctatttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT
                          atttgac  putative branch site (score: 4)
                                cctttacttcctattt  CT-rich tract
                       ttaatttga  TA-rich tract