1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccatcgttgcgtactacgtatacgtacgcacgtaggagtacatcatagatcgatcaaaggttacatgcacggctgaccagtggatgccacgctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACGGGTGCGGCATGGAGCACGCGCCCTGCGGCCCGCACTCCGGCAAGGAGC
species | Zea mays |
transcript | GRMZM2G044851_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|148987145|gb|EE030973.2|EE030973
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|50328864|gb|CO523990.1|CO523990
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGCGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|86474663|gb|DY241033.1|DY241033
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: AGTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTACTCAGGCCGGACEST: gi|71417415|gb|DR804042.1|DR804042
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|74245993|gb|DT653907.1|DT653907
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|74237215|gb|DT645129.1|DT645129
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|71424538|gb|DR806351.1|DR806351
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACEST: gi|74240219|gb|DT648133.1|DT648133
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: CTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTTGTCCTC GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGA
genomic: CTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTT-GTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGA
tagatcgatcaaaggttacatgcacggctgaccagtggatgccacgctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACGGGTGCGGCATGGAGCACGCGCCCTGCGGCCCGCACTCCGGCAAGGAGC
ggctgac putative branch site (score: 20)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatcgttgcgtactacgtatacgtacgcacgtaggagtacatcatagatcgatcaaaggttacatgcacggctgaccagtggatgccacgctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGACGGGTGCGGCATGGAGCACGCGCCCTGCGGCCCGCACTCCGGCAAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG