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gtacgttctgaagttatctttctttgtgatgctttgttaatttattttttgatttttcatataatgattctattgttttcttttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG
species | Zea mays |
transcript | GRMZM2G044457_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|211345912|gb|FL043763.1|FL043763
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|32829302|gb|CD968980.1|CD968980
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|211345911|gb|FL043762.1|FL043762
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|149111503|gb|EE295005.2|EE295005
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|211345905|gb|FL043756.1|FL043756
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|211345906|gb|FL043757.1|FL043757
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAEST: gi|91873243|gb|EB403200.1|EB403200
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|211345910|gb|FL043761.1|FL043761
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|211345908|gb|FL043759.1|FL043759
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGEST: gi|148944284|gb|EC889380.2|EC889380
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATG
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|50334991|gb|CO530117.1|CO530117
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|149090670|gb|EE179995.2|EE179995
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|67035454|gb|CO463987.1|CO463987
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAEST: gi|149027104|gb|EE046395.2|EE046395
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
EST: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATT AGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
genomic: TCCTCAGCGTTGATACAATGGATATTAGTGGAGAACAGCACCAGGACATTgtacgttctg ... ttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAA
taatttattttttgatttttcatataatgattctattgttttcttttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG
ttctattgttttcttt CT-rich tract
tattttttgatttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttctgaagttatctttctttgtgatgctttgttaatttattttttgatttttcatataatgattctattgttttcttttccttgtagAGGCATGACATCGAAAAGATACGATTAGATGCACATGGTAATGTTATTGAAGCAAGAAAAGTTAGCATTGGTGGAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG