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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattaatattcatatgtttatattcgctacatatattagctacggttgttcacttgtggttcttttgaccaactcaccagaaagctgtatttgatacgacacacagGGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAGTCCTGAAACACAG

Basic information

species Zea mays
transcript GRMZM2G044317_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 3
gtaagattaatattcat-atgtttatattcgctacatatattagcta------cggttgttcacttgtggttcttt--------------tgaccaactcaccagaaagctgtatttgatacg-acacac-agGGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAGTCCTGAAACACAG
||||| |||| |||| | |   ||   | |   ||||    |||  |      |||| |||  ||| |||| ||||              |||| ||||   || || ||| | |   ||||   ||  | ||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||
gtaagcttaacattcgttacacttgagtacttgacattccatagacagtaagccggtggtttgcttctggtgctttcaagtttgaacctttgactaacttctca-aaggctttgtgctatacccgcattctagGGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtggttcttttgaccaactcaccagaaagctgtatttgatacgacacacagGGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAGTCCTGAAACACAG
                                    tatttgata  TA-rich tract