1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacagaccccgctcagctcgctgggggccgggcgaccgtgataaatccccggcgggcttcgggcttcaggacttgcatctttgggctaactgcacactgcctgtccttccattccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACGACAATGTCAAGCAG
species | Zea mays |
transcript | GRMZM2G044247_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAG TCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACEST: gi|76285579|gb|DV025147.1|DV025147
genomic: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAGgtacagaccc ... tccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
EST: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAG TCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACEST: gi|148949802|gb|EC895289.2|EC895289
genomic: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAGgtacagaccc ... tccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
EST: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAG TCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACEST: gi|211269203|gb|FL409759.1|FL409759
genomic: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAGgtacagaccc ... tccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
EST: GATGCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAG TCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAKCCTTCAGCTGTTTACEST: gi|211468690|gb|FL380595.1|FL380595
genomic: GAT-CCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAGgtacagaccc ... tccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
EST: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAG TCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACEST: gi|15590197|gb|BI674813.1|BI674813
genomic: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAGgtacagaccc ... tccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
EST: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAG TCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
genomic: AGATCCCTGTGCTGAACGACCTCACCATGGTTCTGGGCTCCATAGCGCAGgtacagaccc ... tccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTAC
aggacttgcatctttgggctaactgcacactgcctgtccttccattccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACGACAATGTCAAGCAG
ggctaac putative branch site (score: 28)
cctgtccttccattcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagaccccgctcagctcgctgggggccgggcgaccgtgataaatccccggcgggcttcgggcttcaggacttgcatctttgggctaactgcacactgcctgtccttccattccattccagTCGAGAGCAACCGGCGTGGTGGTCGACTTCAGCGAGCCTTCAGCTGTTTACGACAATGTCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT