1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctaggtttgtggggctgagcaaacattgaaatctagggtccttgctatgggtcttgccttgcagacatgttggatgttgactttgttcttttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG
species | Zea mays |
transcript | GRMZM2G044027_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|149089880|gb|EE179165.2|EE179165
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|148944203|gb|EC889294.2|EC889294
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|148961007|gb|EE011707.2|EE011707
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|40334152|gb|CK368222.1|CK368222
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTT-CTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|32831707|gb|CD971385.1|CD971385
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|22473192|gb|BU037672.1|BU037672
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAACAGATAACCTGAAGAAGEST: gi|6194647|gb|AW146751.1|AW146751
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|32830323|gb|CD970001.1|CD970001
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|89756809|gb|DY686692.1|DY686692
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGAATA-CTTTTTCCCTGGTTCAAAAAGATAACCTGAAGAEST: gi|148970766|gb|EE021510.2|EE021510
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGA-TAACTTTTTCACTGGTTCAAAA-GATAACCTGAAGA
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|6020952|gb|AW065880.1|AW065880
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: CATCGGCTCTCTACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|67016223|gb|CO444972.1|CO444972
genomic: CATCGGCTCGC-ACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|21987903|gb|BQ779431.1|BQ779431
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|148930565|gb|EE285203.2|EE285203
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|26558105|gb|CA830340.1|CA830340
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|71442898|gb|DR823948.1|DR823948
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|211425100|gb|FK999871.1|FK999871
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|149107237|gb|EE189120.2|EE189120
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|211425097|gb|FK999868.1|FK999868
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|15632416|gb|BI679509.1|BI679509
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|149081449|gb|EE170575.2|EE170575
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|211427693|gb|FK999880.1|FK999880
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|40337515|gb|CK371585.1|CK371585
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|148951041|gb|EC896695.2|EC896695
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|149066780|gb|EE286922.2|EE286922
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|148960534|gb|EE011139.2|EE011139
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|149089846|gb|EE179125.2|EE179125
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|149097834|gb|EE183762.2|EE183762
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|211425101|gb|FK999872.1|FK999872
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|149097829|gb|EE183756.2|EE183756
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|67013235|gb|CO441984.1|CO441984
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: AACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|60672298|gb|DN475062.1|DN475062
genomic: AACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|148945878|gb|EC891170.2|EC891170
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|148956701|gb|EC902571.2|EC902571
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|211427695|gb|FK999882.1|FK999882
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|32165003|gb|CD670321.1|CD670321
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: CATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|6637013|gb|AW261285.1|AW261285
genomic: CATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
tatgggtcttgccttgcagacatgttggatgttgactttgttcttttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG
tgttgac putative branch site (score: 931)
ctttgttcttttac CT-rich tract
ttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaggtttgtggggctgagcaaacattgaaatctagggtccttgctatgggtcttgccttgcagacatgttggatgttgactttgttcttttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - ggggctg
- - - - - - - - - gcaaaca
- - - - - - - - - - - - - - - - - - - tccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga