1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgtcgcctcgcctgcatcccatccttctcatcgttcctcggaccctccaacatatcacattgacagtttccgtgctcgtagtaaacggaagcatcattttttttctggtttggttgcagGAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCACCGGACTGCTGGATTCCAGGGACCCCTTCGACCTGCAGCAACCGCAGATT
species | Zea mays |
transcript | GRMZM2G044004_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAGGTTCAG GAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCACEST: gi|71440982|gb|DR822032.1|DR822032
genomic: GTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAGGTTCAGgtccgtcgcc ... ttggttgcagGAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCAC
EST: GGAGAAGGGCAAGGTCCCCGACAGGTTCAG GAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCAC
genomic: GGAGAAGGGCAAGGTCCCCGACAGGTTCAGgtccgtcgcc ... ttggttgcagGAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCAC
agtttccgtgctcgtagtaaacggaagcatcattttttttctggtttggttgcagGAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCACCGGACTGCTGGATTCCAGGGACCCCTTCGACCTGCAGCAACCGCAGATT
ttttttttctggttt CT-rich tract
atcattttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtcgcctcgcctgcatcccatccttctcatcgttcctcggaccctccaacatatcacattgacagtttccgtgctcgtagtaaacggaagcatcattttttttctggtttggttgcagGAAGCTGCAGCACCCGCACCACGGCGACTTCGCCGGCTGCACGTCGCCCACCGGACTGCTGGATTCCAGGGACCCCTTCGACCTGCAGCAACCGCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT