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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttgagtttcttttactttgttaatttgatttggtaccttttactgtcctgtttgatactgctcctttgctgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGCTGTGCTACTTTTTTCCGCAGAGACAAGTTTTCGCATGTTAAAAAATACGAG

Basic information

species Zea mays
transcript GRMZM2G043509_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043509_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 3'ss of exon 4
gtaactttgagtttcttttactttgtta--atttgatttggtaccttttactgtcctgtttgatactgctcctttgctgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGCTGTGCTACTTTTTTCCGCAGAGACAAGTTTTCGCATGTTAAAAAATACGAG
|||  ||||| |   | |   | | |||  ||  |  ||  |||  || | | || | |||||| ||||| | | | | | | |||| ||| |||||  ||||   ||||| ||||||||||| || |||||||| |||||||| ||||| || ||||||||||| |||
gtatatttgactgcatctggttctattataatacgcatttatacgcttcaatttcttatttgattctgcttcat-gtttttaaagGTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTTTTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgatttggtaccttttactgtcctgtttgatactgctcctttgctgtcacagGTGTATTCTGGAAATCCTATGGCCATAGATGGCTGTGCTACTTTTTTCCGCAGAGACAAGTTTTCGCATGTTAAAAAATACGAG
                                      ctcctttgct  CT-rich tract
               ttttact  TA-rich tract