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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaccagtaccactacctgcacttgtttatttttgtgtccctttgcttcttgtggtttaataattgttgtgtctatggtagGTTGGCGAGTACCAAGGTGCATACAAG

Basic information

species Zea mays
transcript GRMZM2G043198_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211444057|gb|FL415432.1|FL415432
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211273080|gb|FL371948.1|FL371948
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211491514|gb|FL426447.1|FL426447
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211003333|gb|FL404181.1|FL404181
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|148930818|gb|EC873192.2|EC873192
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211084499|gb|FL378037.1|FL378037
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|32828890|gb|CD968568.1|CD968568
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|32799489|gb|CD951725.1|CD951725
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|148953725|gb|EC899090.2|EC899090
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|32804720|gb|CD956956.1|CD956956
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|37426139|gb|CF650819.1|CF650819
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAGATATCCAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAGATATCCAAG
EST: gi|38687965|gb|CK144996.1|CK144996
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|93281968|gb|EB674232.1|EB674232
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211431560|gb|FL401076.1|FL401076
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211311674|gb|FL419261.1|FL419261
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211503999|gb|FL380203.1|FL380203
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211056917|gb|FL385087.1|FL385087
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211395332|gb|FL395257.1|FL395257
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|8367328|gb|BE050273.1|BE050273
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211017664|gb|FL418154.1|FL418154
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211499368|gb|FL394923.1|FL394923
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211423792|gb|FL402788.1|FL402788
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211063939|gb|FL426137.1|FL426137
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|32828953|gb|CD968631.1|CD968631
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211099620|gb|FL375433.1|FL375433
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGCGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211542664|gb|FL412592.1|FL412592
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211054277|gb|FL399886.1|FL399886
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211479962|gb|FL426376.1|FL426376
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|31357689|gb|CD442046.1|CD442046
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211530195|gb|FL395784.1|FL395784
EST:     TAGATGAAGAAATGTCAGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAATACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
EST: gi|211016844|gb|FL388973.1|FL388973
EST:     TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAG                         GTTGGCGAGTACCAAGGTGCATACAAG
genomic: TAGATGAAGAAATGTCGGCAGACCCTTCTGTTTTCTTGATGGGAGAAGAGgtaccaccag ... tctatggtagGTTGGCGAGTACCAAGGTGCATACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttgtgtccctttgcttcttgtggtttaataattgttgtgtctatggtagGTTGGCGAGTACCAAGGTGCATACAAG
                            gtttaat  putative branch site (score: 4)
                             tttaataattgttgt  TA-rich tract