1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacccataaacaaccagtagtctcttgcttcatgcctactggtcacattgtctcttcttgagctcagttcactaatttcatgagcatctcttatttgcagGTGTGAACTTTTCAATAAACATCTCGATCAATACGTGAAAACATTAATTTGATGCCATTGAG
species | Zea mays |
transcript | GRMZM2G039373_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAATATGT-GTAAAAAATCCTCTGTATGCTCCTGGAACACCAAATCA- GTGTGAACTTTTTCA-TAAACATCTCGATCAATACGTGAAAACTTTATTTEST: gi|94473829|gb|EB702787.1|EB702787
genomic: GGAA-TATGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAA-TCAAgtaagtttta ... ttatttgcagGTGTGAACTTTT-CAATAAACATCTCGATCAATACGTGAAAACATTAATT
EST: GTGGAATATGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA GTGTGAACTTTTCAATAAACATCTCGATCAATACGTGAAAACATTAATTTGEST: gi|113681641|gb|DW840470.1|DW840470
genomic: GTGGAATATGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagtttta ... ttatttgcagGTGTGAACTTTTCAATAAACATCTCGATCAATACGTGAAAACATTAATTTG
EST: CCTCTGTATGCTCCTGGAACACCAATCAA GTGTGAACTTTTCAATAAACATCTCGATCA-TACGTGAAAACATTAATTTG
genomic: CCTCTGTATGCTCCTGGAACACCAATCAAgtaagtttta ... ttatttgcagGTGTGAACTTTTCAATAAACATCTCGATCAATACGTGAAAACATTAATTTG
cattgtctcttcttgagctcagttcactaatttcatgagcatctcttatttgcagGTGTGAACTTTTCAATAAACATCTCGATCAATACGTGAAAACATTAATTTGATGCCATTGAG
cactaat putative branch site (score: 188)
tctcttattt putative PPT
taatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccataaacaaccagtagtctcttgcttcatgcctactggtcacattgtctcttcttgagctcagttcactaatttcatgagcatctcttatttgcagGTGTGAACTTTTCAATAAACATCTCGATCAATACGTGAAAACATTAATTTGATGCCATTGAG
- - - - aacaacc
- - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - -ctactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagc