1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgttctaggctatctgacatgcaatagaataaattccatggacttcatgatactagcaatttaatgattgcctctataatttttttgctccattttcagGTAGATCTGGAGCATAATCAATATAGGTCATTTCAGGGCTTCACCTGCTTGATGCAGATTTCAACAAGAACAGAAGACTTTATTGTGGACACTCTTAAGC
species | Zea mays |
transcript | GRMZM2G039096_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tcatgatactagcaatttaatgattgcctctataatttttttgctccattttcagGTAGATCTGGAGCATAATCAATATAGGTCATTTCAGGGCTTCACCTGCTTGATGCAGATTTCAACAAGAACAGAAGACTTTATTGTGGACACTCTTAAGC
atttaat putative branch site (score: 176)
tttttttgctccattt putative PPT
tctataattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttctaggctatctgacatgcaatagaataaattccatggacttcatgatactagcaatttaatgattgcctctataatttttttgctccattttcagGTAGATCTGGAGCATAATCAATATAGGTCATTTCAGGGCTTCACCTGCTTGATGCAGATTTCAACAAGAACAGAAGACTTTATTGTGGACACTCTTAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - -acatgca
- - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - -catggac
- - - - - - - - - - - - - - - - - - - - - - - - tgatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc