Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggttgaaattcaaatagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttatggtttatgatggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

Basic information

species Zea mays
transcript GRMZM2G038606_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 3
tggttgaaattcaaatagtaacaatgtggggtctcagttatcctgctctattagcttgtga-gtttcctgtagttatggtttatgatggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
 |  |    |        |       |  |||  || ||    || ||  |||| |||||| |  | ||||  |  |  ||  | |||| |   ||||||||| ||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||
cgaattgtgtgttctcttttgggtcatttggttccaattggtttgatcgtttagtttgtgatgaatgctgtt-tcctcattgtttatggttgtcattgcagGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
----tggttgaaattcaa-atagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttatggtttatgat----ggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
     | |     ||||   |  |  |    |    |||||| |||  |  |||  ||   ||   || |  |  |  | |   |||  ||       | | | | ||||| || || |  |||||| | ||||| ||||| ||||||||||| || ||||| ||||| ||||| ||||||||||||
gtaacgatcttttttcactgttctccctgcattcactctcagatattgtcttctcata-tgtgaatgtctgttacaact-taacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G17430.2 (Glycine max), 3'ss of exon 3
----tggttgaaattcaa-atagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttatggtttatgat----ggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
     | |     ||||      |  |    |    |||||| |||  |  |||  | |  ||   ||||  ||    | |   |||  |        | | | | ||||| || || |  |||||| | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||||||||||
gtaacgatcttttttcactgctctccctgcattcaatctcagatattgtcttctcat-gtgtgaatgtttgttgctact-taacttacaacttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 3'ss of exon 4
----tggttgaaattcaaatagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttatggtttatgatggctcga--attgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
    |  |     |||| ||  | | |          |   |||  || |   || |  || || ||  |    | | ||   || || || || ||  | |  ||||||| || |  |||||||||||||| || ||||| || || || ||||| || ||||| ||||||||||| ||||||
gttatcttatgttttcatatgttgatacaaatatactttgtttagacttcgtgatgaaattttgtgtagctgacactcatatattttgctg-cttgattactctagGACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
-tggttgaaattcaaatagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttat---ggtttatgatggctcgaatt----gcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
 |  |  |   |  |||  | ||  |    | |    ||| | || ||   ||| ||||  ||||     | | | |     || ||| |   ||  |||    | |||| || || | ||||||||| ||||| ||||| ||||| || ||||| || ||||| |||||||||||||||||||||
gtaatcaactctttaat--tgactgttcttgtttgttgtt-tacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG

upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 3
---tggt-tgaaattcaaatagtaacaatgtggggt-ctcagttatcctgctctattagcttgtga-----gtttcctgtagttatggtttatgatggc--tcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
   |||| |    |||||  | | |     |    | ||    | |  |  | || |  |||   |      | | ||||  ||   | | |  ||||   |  || || |||| || || | ||||||||| |||||||| || |||||||| ||||| || |||||||||||  |||| ||||| |||
gtatggtatttctttcaatcaattatgtcttatttttctttaatttatttttataatgacttaaaatgatcatcttctgtgattcatggtcacaatgggaattaaaatgtagGATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211074698|gb|FL076203.1|FL076203
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533726|gb|FL071650.1|FL071650
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGYTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211536731|gb|FL071660.1|FL071660
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGT-ACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|94474355|gb|EB703313.1|EB703313
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|5343007|gb|AI795312.1|AI795312
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|31358015|gb|CD442372.1|CD442372
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|78115517|gb|DV533905.1|DV533905
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077444|gb|FL076220.1|FL076220
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|89252869|gb|DY624655.1|DY624655
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077445|gb|FL076221.1|FL076221
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077443|gb|FL076219.1|FL076219
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077441|gb|FL076217.1|FL076217
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211536732|gb|FL071661.1|FL071661
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533731|gb|FL071655.1|FL071655
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|32868742|gb|CF008424.1|CF008424
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211074704|gb|FL076209.1|FL076209
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211074701|gb|FL076206.1|FL076206
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|37396802|gb|CF635695.1|CF635695
EST:     TGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: TGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533729|gb|FL071653.1|FL071653
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533732|gb|FL071656.1|FL071656
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077437|gb|FL076213.1|FL076213
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|32804245|gb|CD956481.1|CD956481
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077438|gb|FL076214.1|FL076214
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|78107776|gb|DV526194.1|DV526194
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|40333860|gb|CK367930.1|CK367930
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077436|gb|FL076212.1|FL076212
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533730|gb|FL071654.1|FL071654
EST:     CGACACGTGGATGAACATCCATCCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: CGACACGTGGATGAACATCCATC-TTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211074703|gb|FL076208.1|FL076208
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211536733|gb|FL071662.1|FL071662
EST:     GCGACACGTGGATGAACATCAATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|37375632|gb|CF624266.1|CF624266
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533727|gb|FL071651.1|FL071651
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211074702|gb|FL076207.1|FL076207
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533728|gb|FL071652.1|FL071652
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211536730|gb|FL071659.1|FL071659
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533733|gb|FL071657.1|FL071657
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|9952507|gb|BE639090.1|BE639090
EST:     GCGACACGTGGATGAACATCCATCTTANGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|76927712|gb|DV171333.1|DV171333
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTTGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|84970052|gb|DW468427.1|DW468427
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077434|gb|FL076210.1|FL076210
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|32827249|gb|CD966927.1|CD966927
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211074700|gb|FL076205.1|FL076205
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211077442|gb|FL076218.1|FL076218
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211533734|gb|FL071658.1|FL071658
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|211536735|gb|FL071664.1|FL071664
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
EST: gi|78115516|gb|DV533904.1|DV533904
EST:     GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAG                         GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC
genomic: GCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... cgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctattagcttgtgagtttcctgtagttatggtttatgatggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG
                                 tttatgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggttgaaattcaaatagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttatggtttatgatggctcgaattgcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

- - - - - - - - - - -caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgatg