1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cactcgtttcagcttatataatataatcctcgcatgaatacagcagggggcctggtctctgcaaaagctaactactgaacatgtttccttgtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCTGCACCGAAGAATTCCCGCTCTGCGCCACCAATCCCTATGGGCGGACAA
species | Zea mays |
transcript | GRMZM2G038598_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAG CTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCEST: gi|74237590|gb|DT645504.1|DT645504
genomic: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAGgtaaacgcac ... gtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCC
EST: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAG CTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCEST: gi|71440044|gb|DR821094.1|DR821094
genomic: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAGgtaaacgcac ... gtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCC
EST: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAG CTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCEST: gi|58029768|gb|CX725195.1|CX725195
genomic: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAGgtaaacgcac ... gtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCC
EST: TCGGCACCATCACCCTCCTCGAGGTGATGGCTGCGAACGGCTGCAAGAAG CTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCAEST: gi|78085825|gb|DV514218.1|DV514218
genomic: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAGgtaaacgcac ... gtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCC
EST: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAG CTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCC
genomic: TCGGCACCATCACCCTCCTGGAGGTGATGGCTGCGAACGGCTGCAAGAAGgtaaacgcac ... gtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCC
gggggcctggtctctgcaaaagctaactactgaacatgtttccttgtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCTGCACCGAAGAATTCCCGCTCTGCGCCACCAATCCCTATGGGCGGACAA
agctaac putative branch site (score: 2)
tttccttgtc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactcgtttcagcttatataatataatcctcgcatgaatacagcagggggcctggtctctgcaaaagctaactactgaacatgtttccttgtcattacagCTGGTGTTCTCGTCATCTGCAACTGTCTATGGGTGGCCCAAGGAAGTACCCTGCACCGAAGAATTCCCGCTCTGCGCCACCAATCCCTATGGGCGGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA