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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA

Basic information

species Zea mays
transcript GRMZM2G038126_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
---tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaatgttgtt---atctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
     | || |   | | | | |       || | |||   | |||    | | |   || |     | ||||| |  |    | || ||   || |    | ||||||||||| ||||||||||||||||||||||||||||||||||| || ||  |||| || || ||||| ||||||||||| ||||| |||||| | ||||
agggatttacacagatattgtcgag-----aatattttatgaaattcctatgcttga-aggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G05730.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagt-aatgttgttatctatgtt-----acagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                    |||  || |     |   |  |||     |    |  || |  |||   |||   ||| ||  | |||  ||| |   | |  ||| || |  |     |||||||||||| ||||| ||||| || ||||| || |||||||||||||||||  | ||||||||  | || |||||||||||||||||||| || |||||  
ggtgtctatgaaatgatatttctgttagcttctgtgattatgttttgtgctactattagtacttactaatatctcccgagctgcagtgaatca--gttttcactta-tctcttaatctctggttatttggtttaattacctgttcttttctacaGATGGATGGTTTTGACCAAACGGTAAATGTTAAAGTTATAATGGCAACTAACAGAGCAGACACCTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGAT-

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G31450.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------------------------------------tctctaaaagcaaacttttggagttccaacagtttt-ctagattatagttcctactagctctttttgtttctt--attagtaatgttgttatctatgtta-----cagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                                                       |   |    |   |  | |     || | |  |||   | || || | |||    |   | |   | ||   |  | |  |  | |  ||| || |  |      ||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||  | ||||||||| | || |||||||||||||||||||| || |||||  
gtatctatgaaatgatatttctattaggtgctgtgagtatgttgttactactattagtagttactaatttctgctggctgctgtgtattagtttttgtttatctcttaccctctagctatttggttggactacacttctctatgattttagatattctctgaagtgttggtttaattacctgttcttttcttcagATGGATGGTTTTGACCAAACAGTTAATGTTAAAGTTATTATGGCAACTAACAGAGCAGACACTTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G31470.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------------------------------tctctaaaagcaaacttttg--------gagttccaacagtttt-ctagattatagttcctactagctctttttgtttctt--attagtaatgttgttatctatgtta-----cagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                                                 ||   |   |  |||||         |  || | |  |||   | |  || | ||||   |   | |   | |||  |  | |  |  | |  ||| || |  |      ||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||  | ||||||||| | || |||||||||||||||||||| || |||||  
gtatctatgaaatgatatttatgttaggtgctgtgagtaggttgttactactattagtagttactaatttctgatgggctgctgtgaattagtttttgtttctcttaacctctagctatttggttgggctacacttccctatgattttagatattttctgaagtgttggtttaattacctgttcttttcttcagATGGATGGTTTTGACCAAACAGTTAATGTTAAAGTTATTATGGCAACTAACAGAGCAGACACTTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 3'ss of exon 3
tctctaaaagcaaacttttggagttccaacagttttctagattata-gttcc----tactagctcttt-ttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
    | | | ||||   |  || ||  |   ||  |  ||||  || |||      || | | | ||  |||| || | | | | ||  ||||   |  | |  |||||||||| ||||| || || |||||||| ||||| ||||||||||| ||  ||||||||||||||||||||||||| || |||||||| ||||||||  
---gtgagaacaaataat--gaattttagttgtaattcagatcttatgttgtagaataatggattttagttgtgtcct-taacttattgtgttgaattcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAACAGGGCAGACACTCTAGATCCTGCTCTCTTACGTCCTGGAAGACTTGATC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv06s0004g08220.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------------------------------tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaat----------------gttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                                                 |  | ||||  ||    || ||     ||    | | | ||||| ||    |||| |||  | |||||   ||  | |  |                | | | |  | |  | ||||||||||||||||| || || |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||  | |||||||| ||||| ||| 
gtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttga---ttaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAATCGAGCAGACACTCTGGACCCTGCACTTCTTCGTCCTGGAAGACTCGACC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S243_67V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------------------------------------tctctaaaagcaaacttttggagttcca-acagttttc--tagattatagttcctactagctct-----ttttgtttcttat-tagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                                 |||   |  |  |  |  | |||   ||||   ||  |||  |  ||||| |  |     |     ||| | | ||| | |   | | ||  | |    ||||||||||||||| |||||||||||||| ||||| || || || ||||| || || |||||||| |||||||| || ||| ||||||| |||||  | |||||  
gtatgaagtctttttaatttctcagttttttgtctgaagagtccattcctcaaatggtggacctcctaggtgatagatcatttatttctgtacagaactcggtagtcttcagttcatttttctcgtcgaagtttggctgcttttcttacatttttaatgttctggttacagATGGATGGTTTTGATCAAACAGTCAATGTTAAAGTGATCATGGCTACCAACCGGGCAGATACTCTAGACCCCGCTTTGTTGCGACCTGGACGTCTTGATC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S147_100V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------------tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctcttt-----ttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                      ||||  |    | |     |  |||||||  || |  |  |||  |||   |  |  ||  ||     |||    || | |   ||||| |    |  ||| |||||||||||||||||||| || || ||||| ||||| || ||||| || ||||| ||||| ||||| || || ||| | ||||| || ||  | |||||  
gtataacatttttctggttcgaagtttgtcaagcatgttctccgattttagag---cgatgttccaat-gtctgttgaattgaagtcttttgtttctgcttaggtgttgcgctttctcatacatgttttgtgtttggttgcagATGGATGGGTTTGATCAGACTGTCAATGTCAAGGTGATCATGGCTACCAATCGAGCAGATACTCTTGACCCCGCTTTATTGCGACCCGGACGTCTTGATC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S36_183V6.1 (Physcomitrella patens), 3'ss of exon 3
----tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
      | |    ||   ||  |  |   |||| |     | | |     |||   |||   || |||| |   | | |   |   ||  | |   |||| ||||||||||| || || ||||| |||||||||||||| || ||||| || ||||| || || ||||| ||||| || ||| | || |||||  | |||||  
gaacatttttggtgctcgctgctttaaggccaataagc--cgaaacataggttggcacttcgtcattttctaaatcaatctcacaatt--tgttgctgtttcagATGGATGGTTTCGACCAAACTGTGAATGTGAAGGTGATCATGGCCACCAATCGTGCTGATACTCTTGATCCAGCGCTGCTACGACCTGGACGTCTTGATC

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ38338 (Selaginella moellendorffii), 3'ss of exon 3
tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                    |   |  |    |            | | ||  ||   |   |  ||||||||||| || |||||||| ||||||||||||||||| ||||| || || || || |||||| | ||||| || || |||||||| || ||||||||||
-------------------------------------------------gtaaaaggaaccgagtagagtaagccgctgacgtccttg--tgcttctcagATGGATGGTTTCGATCAAACCGTGAATGTGAAGGTTATCATGGCTACAAACCGTGCGGACACTTTGGATCCCGCGCTCTTGCGTCCGGGAAGACTTGACA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ04233 (Selaginella moellendorffii), 3'ss of exon 3
tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
                                                    |   |  |    |            | | ||  ||   |   |  ||||||||||| || |||||||| ||||||||||||||||| ||||| || || || || |||||| | ||||| || || |||||||| || ||||||||||
-------------------------------------------------gtaaaaggaaccaagtagagtaagccgctgacgtccttg--tgcttctcagATGGATGGTTTCGATCAAACCGTGAATGTGAAGGTTATCATGGCTACAAACCGTGCGGACACTTTGGATCCCGCGCTCTTGCGTCCGGGAAGACTTGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67017682|gb|CO446431.1|CO446431
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|31355065|gb|CD439422.1|CD439422
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|32836399|gb|CD976077.1|CD976077
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|19351524|gb|BM896056.1|BM896056
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|33092922|gb|CF052916.1|CF052916
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|32835304|gb|CD974982.1|CD974982
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|60398034|gb|DN230850.1|DN230850
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|32908278|gb|CF013091.1|CF013091
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAAC
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAAC
EST: gi|78112286|gb|DV530680.1|DV530680
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|6194636|gb|AW146740.1|AW146740
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|32837433|gb|CD977111.1|CD977111
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|4314880|gb|AI444677.2|AI444677
EST:     CT-GT-CTGA-CGAG-AGTTC-ACGCATTC-TATGGAGCTA-TCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|149051875|gb|EE156005.2|EE156005
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|31354242|gb|CD438599.1|CD438599
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|89246893|gb|DY618679.1|DY618679
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|32835786|gb|CD975464.1|CD975464
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|148931877|gb|EC877341.2|EC877341
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|24769170|gb|CA404299.1|CA404299
EST:     TATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: TATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|6342662|gb|AW165486.1|AW165486
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|211331026|gb|FL444742.1|FL444742
EST:     CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
EST: gi|18964972|gb|BM661316.1|BM661316
EST:     CTGGTGCTGACCGAGTAGTTCAACGCATTCTTATGGAGCTACTCAATCAG                         ATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT
genomic: CTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagctta ... tatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcctactagctctttttgtttcttattagtaatgttgttatctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA
               tttttgtttcttatta  TA-rich tract