Sequence
atgc intronic sequence ATGC exonic sequence...atcccctgttttcataatgagatgtatactgatcgtgttattaataattaccacagatatatttctacagcttagcatgaccaagtgttctcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G038066_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g41740.1 (Oryza sativa), 3'ss of exon 2
-atcccctgttttcataatgagatgtatactgatcgtgttattaataattaccacagatatatttctacagcttagcatgaccaagtgtt-ctcttt-tgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
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ctcctagtacacctatgctgacctgatatttgagcac-tcataagcgttta--actaatatatttgtccagccatacataaccatgcgtttctctttctgcagAAAAGGAAAACTTGTGCCTTTATGGGTTTCCCAATGAGCATTGGGAAGTAAATTTGCCCGCAGAAGAGGTGCCACCTGAGCTCCCAGAGCCAGCATTGGG
upper sequence: GRMZM2G038066_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G00680.1 (Glycine max), 3'ss of exon 2
-atcccctgttttcataatgagatgtatactgatcgtgttattaataattaccacagatatatttctacagcttagcatgaccaagtgttctc--ttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
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aggattaagaatttttagagggattgaaaggcttcctgtttgttttagatattat--atttggtgcttgtgttttaca-aatcaattcccttcattctttcagAGAAGGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCCGTACTGGG
upper sequence: GRMZM2G038066_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G04040.1 (Glycine max), 3'ss of exon 2
---atcccctgttttcataatgagatgtatactgatcgtgttattaataattaccacagatatatttctacagcttagcatgaccaagtgttctc--ttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
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aggattaagaattatttta--gggattgaaaggcttcgtgtttattttagatattat--atttggtgcttgtgttttata-aatcaattcccttcattctttcagAGAAAGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCCGTGCTGGG
upper sequence: GRMZM2G038066_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G07970.1 (Glycine max), 3'ss of exon 2
atcccctgttttcataatgagatgtata-ctgatcgtgttattaataa--ttaccacagatatatttctacagcttagcatgaccaagtgttctcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
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-gcatgtatctcaaaaatctaatttgcaatttgtggtatattaaacaagtttacattgtaaaatttattgatgctttatttgtttacctgttgtacat--cagAAAAGGAGAATTTATGTCTGTATGGATTCCCCACTGAACAATGGGAAGTAAATTTGCCTGCTGAAGAAGTTCCCCCAGAACTTCCCGAGCCAGCACTGGG
upper sequence: GRMZM2G038066_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G26210.1 (Arabidopsis thaliana), 3'ss of exon 2
atcccctgttttcataatgaga-tgtatactgatcgtgttattaataattaccacagatatatttctacagcttagcatgaccaagtgttctcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
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gtagagtttgagcggagtcaaagtgttgattttttgtttgacttggttttaatttaaggttttttgaacaa-ttgtcatcattttccttttgtgattatagAAAAGGAGAACCTTTGCCTTTACGGACATCCAAATGAGCACTGGGAAGTGAATTTGCCAGCTGAAGAGGTTCCTCCTGAGCTCCCAGAGCCTGTCTTGGG
upper sequence: GRMZM2G038066_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv11s0016g01500.t01 (Vitis vinifera), 3'ss of exon 2
atcccctgttttcataatgagatgtatactgat-cgtgttattaataattaccacagatatatttctacagctta---gcatgac-----caagt-gttctcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
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----------ttcaaaggagaacaaatattcatacctactttatgtggctaccttgcttcagttaccgatggttattgacatgttgtattcaactcactctatattgcagAGAAGGAAAATCTTTGCCTTTATGGATTCCCTAATGAACTGTGGGAAGTTAATTTACCTGCTGAAGAGGTGCCGCCTGAGCTCCCTGAACCTGCCTTAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78104974|gb|DV523392.1|DV523392EST: TATGTAATGTAATGGAAGGCTGCTGGCAGTTGAATTCTGAACCCATGGTG AAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAA
genomic: TATGTAATGTAATGGAAGGCTGCTGGCAGTTGAATTCTGAACCCATGGTGgttagtggtt ... tcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattaccacagatatatttctacagcttagcatgaccaagtgttctcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
tgttctctttt CT-rich tract
atatatttcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcccctgttttcataatgagatgtatactgatcgtgttattaataattaccacagatatatttctacagcttagcatgaccaagtgttctcttttgcagAAAAAGAAAACTTGTGCCTGTATGGGTTTCCTAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAGAGGTGCCACCTGACCTCCCAGAACCAGCATTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-tcccctg
- - - - - - - - - - - - - tactgat
- - - - - - - - - - - - - - - - - - - - - - - - - ccacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgac