1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttgtcacttaaccttttatgaatttgattcatttttcccttacataaatccaatcaattgtaattttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCCCATATGAGTGGCAAGTTTATAA
species | Zea mays |
transcript | GRMZM2G037923_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAG GTTGCATTGAAATTCGAGCATCGTAACAGTAAAAGAATGCA-TTATGGNNNEST: gi|32928688|gb|CF033500.1|CF033500
genomic: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAGgtttgtcact ... ttttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGA-TGCAATTATGGCCC
EST: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAG GTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCEST: gi|148934547|gb|EC878591.2|EC878591
genomic: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAGgtttgtcact ... ttttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCC
EST: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAG GTTGCATTGAAEST: gi|32929679|gb|CF034491.1|CF034491
genomic: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAGgtttgtcact ... ttttttgtagGTTGCATTGAA
EST: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAG GTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCEST: gi|78083129|gb|DV511522.1|DV511522
genomic: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAGgtttgtcact ... ttttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCC
EST: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAG GTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCC
genomic: GTCGAAGGGTTTCTGGTGGTGCTGCTCGCACTGGTCCTGATGCATATGAGgtttgtcact ... ttttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCC
tgaatttgattcatttttcccttacataaatccaatcaattgtaattttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCCCATATGAGTGGCAAGTTTATAA
cccttac putative branch site (score: 3)
ttttttgt putative PPT
aatcaattgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcacttaaccttttatgaatttgattcatttttcccttacataaatccaatcaattgtaattttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCCCATATGAGTGGCAAGTTTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG