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gtcagtactgcctgctgcttttttttagaataccgtataagttcttcccgctaatacctcgggttaaatcaatctcatcctgttggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAAGCAAATGCTGAAGATGGTGTGAGGCTTATTCCCAGTGGAACACAAATTG
species | Zea mays |
transcript | GRMZM2G037624_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAAEST: gi|76012269|gb|DT939439.1|DT939439
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAAEST: gi|71450154|gb|DR831204.1|DR831204
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAAEST: gi|31355523|gb|CD439880.1|CD439880
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
agttcttcccgctaatacctcgggttaaatcaatctcatcctgttggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAAGCAAATGCTGAAGATGGTGTGAGGCTTATTCCCAGTGGAACACAAATTG
cgctaat putative branch site (score: 20)
ttaaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtactgcctgctgcttttttttagaataccgtataagttcttcccgctaatacctcgggttaaatcaatctcatcctgttggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAAGCAAATGCTGAAGATGGTGTGAGGCTTATTCCCAGTGGAACACAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA