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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacagtttcatctgtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG

Basic information

species Zea mays
transcript GRMZM2G037585_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037585_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g71000.1 (Oryza sativa), 3'ss of exon 4
---tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacagtttcatct-gtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
   |  |   ||| |  | | | ||   |||  ||| |    |  || | ||  | || |||| ||| || | | | ||  |||||  |||||||  | |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||| |||||||
aatttgtaaatga-aaccagtttctaatgcaatcttaattgaaaaaaaaact--tcgtggacatttttattttggataatcaatacatttcatctg-tttgcagGCTCGTCCACTATTCAAGGACCGCAGGAAGTTCCCTAAAATGGCTGATCCAATGCTCCAAGGTCGCTTCCCTATGAGGGGTCTGTATCAGGCTTTAGCTG

upper sequence: GRMZM2G037585_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0020g01770.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------------------tgctgtctgatagactgatactgcagcagcctttaaaacagcaacatctgttggtagacag------tttcatctgtagaactaatacggttcatct-aatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
                                                    | || | | | | | |   |     |      ||  |    |   || | ||  || |||       | |  | | |     || |  |    || | |||||| |||| || ||||| ||||||||||| ||||| |||||||| |||||||||||| | || || ||||| |  || ||| | || || || || ||  |||| |
gtaagtgtttcttttctgcattttcccaatttattggcttttattgtactttttctttttaaca-atttccatgaaggtgatgcttgcatatactcaatttattattatacaagatttctcttctttttccctttattttgtgggatatgaatctgtagGCACGACCACTTTTCAAGGACCGTAGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAAGGCCGTTATCCAATGCGAGGACTTTACCAAGCTCTAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgttggtagacagtttcatctgtagaactaatacggttcatctaatctgcagGCTCGTCCACTGTTCAAGGACCGCAGGAAATTCCCTAAAATGGCTGATCCAATGCTTCAGGGCCGCTTCCCTATGAGGGGTCTATATCAGGCCTTAGCTG
                                       ttcatct  CT-rich tract
                            aactaata  TA-rich tract