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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcggtcccaaatttcacttttaacatgattatatgcttctgggtttcttcctgcctaactcacatttgatctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG

Basic information

species Zea mays
transcript GRMZM2G037342_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148996402|gb|EE035697.2|EE035697
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|78119306|gb|DV537690.1|DV537690
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|71315380|gb|DR794294.1|DR794294
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|76921052|gb|DV168433.1|DV168433
EST:     CTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: CTGTTTGGTGCAGTTGGCACCTTGATCTCTTTT-ACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|32866161|gb|CF005843.1|CF005843
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCTTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|20300970|gb|BQ163913.1|BQ163913
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|71426858|gb|DR807908.1|DR807908
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|18964389|gb|BM660977.1|BM660977
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|50328971|gb|CO524097.1|CO524097
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|149058822|gb|EE156843.2|EE156843
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|76912611|gb|DV164818.1|DV164818
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|149015463|gb|EE045330.2|EE045330
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|148931601|gb|EC874712.2|EC874712
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgattatatgcttctgggtttcttcctgcctaactcacatttgatctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAGACTATCTTG
     ttatat  TA-rich tract