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...tcaattactcatgatgaaataatatcttgtatttttgttttggcattattattaccaactgttttctgatattttgatatgccatttaactttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC
species | Zea mays |
transcript | GRMZM2G035417_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|211524990|gb|FL195258.1|FL195258
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CGTCGAGTGGAGCTTCTACCACTACTGCTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGCCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|29130299|gb|CB381003.1|CB381003
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGEST: gi|71448259|gb|DR829309.1|DR829309
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAG
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|78121958|gb|DV540342.1|DV540342
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|211521980|gb|FL195242.1|FL195242
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CGTCGAGTGGAGCTTCTACCACTACTGCTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGCCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|78107573|gb|DV525991.1|DV525991
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|9825075|gb|BE575292.1|BE575292
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|5566780|gb|AI881646.1|AI881646
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|94472331|gb|EB701289.1|EB701289
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAAACACCEST: gi|20803264|gb|BQ294314.1|BQ294314
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAA-CACC
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|91876714|gb|EB406671.1|EB406671
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|211524983|gb|FL195251.1|FL195251
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAWCACCAEST: gi|74244160|gb|DT652074.1|DT652074
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|76908411|gb|DV162927.1|DV162927
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAEST: gi|89763929|gb|DY690917.1|DY690917
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
EST: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTG GGCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
genomic: CATCGAGTGGAGCTTCTACCGCTACTACTGCAAAAGCTCCTGCAACTCTGgttagttttg ... tttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCA
ttattattaccaactgttttctgatattttgatatgccatttaactttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC
atttaac putative branch site (score: 866)
ttttctgatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaattactcatgatgaaataatatcttgtatttttgttttggcattattattaccaactgttttctgatattttgatatgccatttaactttgcaatagGCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - -tgatgaa
- - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccatt