1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgatatcatctaactagtttcattggccacttgtttgattgttctcttgattttattttgaattttaaaacaaatcctaatgcagATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGGAACTATGATCTAAACTTTAAGAATCAGCCTAATGATGGAGTCCATGTTC
species | Zea mays |
transcript | GRMZM2G034848_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGAGAAGGCAGGCTACACTGGAATG ATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGGEST: gi|89762441|gb|DY690022.1|DY690022
genomic: ATTGAGAAGGCAGGCTACACTGGAATGgtgtgatatc ... cctaatgcagATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGG
EST: GTCTTGTCTTGCTTATGGATGCCATTGAGAAGGCAGGCTACACTGGAATG ATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGGEST: gi|148965075|gb|EE015894.2|EE015894
genomic: GTCTTGTCTTGCTTATGGATGCCATTGAGAAGGCAGGCTACACTGGAATGgtgtgatatc ... cctaatgcagATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGG
EST: ATGCCATTGAGAAGGCAGGCTACACTGGAATG ATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGG
genomic: ATGCCATTGAGAAGGCAGGCTACACTGGAATGgtgtgatatc ... cctaatgcagATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGG
ttgtttgattgttctcttgattttattttgaattttaaaacaaatcctaatgcagATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGGAACTATGATCTAAACTTTAAGAATCAGCCTAATGATGGAGTCCATGTTC
tcctaat putative branch site (score: 42)
ttgattttattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatatcatctaactagtttcattggccacttgtttgattgttctcttgattttattttgaattttaaaacaaatcctaatgcagATCAAAATTGGAATGGATGTTGCGGCATCAGAGTTCCTTACAAAGGATGGGAACTATGATCTAAACTTTAAGAATCAGCCTAATGATGGAGTCCATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA