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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA

Basic information

species Zea mays
transcript GRMZM2G034794_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 3
gtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagt-actgatgccacatctggctcttgttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
|||   || | |    |||| |     | | || || |  |      |   || |    | | |||    |  ||| | |  ||  |  |   |||||   |||||||||||||||||||||||| ||||| ||||| || |||| | | ||||||||||| ||||||||||||||||| ||||| ||||||||||
gtacatttcactttactgagatctttcaaagatgattatcaacaatgtatctgccttccattaatg----acttggttttctttggtttaatgcagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGTGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

upper sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
gtatgcttaattgagttgag--ctta-acaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
||||  || |||    || |  |||    |||||  ||  | || ||||| |    |    | | || ||     | | | |  ||     |    ||||   |||||||||||||||||||||||| ||||| ||||| || ||||   | ||||||||||| ||||||||||||||||| ||||| ||||||||||
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgctttt-cattaattcc----tttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

upper sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 3
gtatgctta-attgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
||||| | | ||    |||   || | ||  |    |  || ||     | ||||  || ||||| | |    |   | ||||| |        ||||   ||| ||||| || |||||| ||||||| || ||||| ||||||||| |  |  | ||||||||||| ||||||||||| |||||||| || || |
gtatgttaacatcacattg---ttgaaaacctggt-tatgagttgctgactttgttggt-ctgattctattgttatgtgttgttgc--------agGACTCCACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACACTGCTGTAAGAAATGATCCAAGAATCAACTGGCTCTGCAATCCAGTCCATA

upper sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtact--gatgccacatc-----tggctcttgttactggacaac--agGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
|||||| | |    |||     | || || |   |||  |   |  |    ||| | || |  |    ||  |      ||| |    |  ||||    |  ||||    |||||||||||||  ||||| || ||||| ||    || |||| | || |||| ||||||||||||||||||||| | ||||| ||||||||||
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA

upper sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 3
gtatgcttaattgagttgagcttaacaagatatcatg--agaattttcatccttgtcagtactgatgccacatctggctcttgtta---ctggacaa-cagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
 |    |    |   ||     ||   | |||| |||   | |  | ||    ||| ||  |  |  |   | ||   |  | | |    |   ||  ||||||   || ||||| |||| |||||| || || |||||||  ||||| | | | || || ||||||||||||||||||||| | ||||| ||||||||||
-tcaattcgtctttttttcatatatatatatatgatgctggcacatacacatatgtgagctcctagtcggtagctaatttctctgaaaattttccattcagGATTCTACATACAAATACTATGAGATAATCCTAGTTGATGCTGCCCATAATGCAATTCGAAATGATCCAAGGATCAACTGGATCTGCAAGCCTGTGCACA

upper sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 3'ss of exon 3
---gtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttg---ttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
    |    ||  ||| ||||   |||  ||     || |  |  |   |||   |  |||  |         | |  || |     |   |      |||||    || ||||||||||||||||||||||| ||||||  |   || ||    ||||| || ||||||||||| || ||| |    || || || ||||
tgccttctatttgttgggttgctattagtaat-ccccacgccatgtgggatctgcggaagtggtctgtgagggtttacctatcaaaatggtttcggtgcagGACTCTACATACAAGTACTTTGAGATCATTCTGGTTGATCCGCAACATACAGTTATCCGTAAGGATCCAAGGATTAATTGGATTGTGAACCCCGTTCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83278618|gb|DV942626.1|DV942626
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|211043357|gb|FL434192.1|FL434192
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|14244396|gb|BG842379.2|BG842379
EST:     ACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: ACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|89247240|gb|DY619026.1|DY619026
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|113789347|gb|DW909163.1|DW909163
EST:     CTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: CTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|1713336|gb|AA143931.1|AA143931
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTG
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTG
EST: gi|60339194|gb|DN206167.1|DN206167
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|211322521|gb|FL456184.1|FL456184
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|30306792|gb|CD001465.1|CD001465
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|33096855|gb|CF056815.1|CF056815
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|50331697|gb|CO526823.1|CO526823
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|50331696|gb|CO526822.1|CO526822
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60397206|gb|DN230022.1|DN230022
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60342479|gb|DN209452.1|DN209452
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|4647041|gb|AI622116.1|AI622116
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|4804132|gb|AI665998.1|AI665998
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|9254922|gb|BE345390.1|BE345390
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|50334250|gb|CO529376.1|CO529376
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|18964393|gb|BM660980.1|BM660980
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAATTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTGGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|74239605|gb|DT647519.1|DT647519
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60399362|gb|DN232176.1|DN232176
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|148929092|gb|EC874452.2|EC874452
EST:     CTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAGTGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: CTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|60339489|gb|DN206462.1|DN206462
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|5739712|gb|AI947288.1|AI947288
EST:     AGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: AGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|211043356|gb|FL434191.1|FL434191
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|8665666|gb|BE186482.1|BE186482
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
EST: gi|9028655|gb|BE238695.1|BE238695
EST:     GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAG                         GATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT
genomic: GACGAAAGCTTGGTGGACTCAGGGTTCTCAACTCCTACTGGGTGAATGAGgtatgcttaa ... tggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcatccttgtcagtactgatgccacatctggctcttgttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA
                 tactgat  putative branch site (score: 2)