1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagtatacaaaaataataatgcacctgtataacagcaacgaagaattgcatcttaaatttgcttgaagtatacaaaaataataatgcacctgtataacagCAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAACAACAACGACCTCGCCTTCTTCACGTACGAGGAGAAGCGGAAGCTCGGGT
species | Zea mays |
transcript | GRMZM2G034791_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAG CAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAACEST: gi|78120414|gb|DV538798.1|DV538798
genomic: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAGgtaactacta ... tgtataacagCAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAAC
EST: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAG CAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAACEST: gi|211348085|gb|FL376460.1|FL376460
genomic: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAGgtaactacta ... tgtataacagCAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAAC
EST: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAG CAACGAACACAACGCGCGCCAAGGCEST: gi|50338365|gb|CO533491.1|CO533491
genomic: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAGgtaactacta ... tgtataacagCAACGAACACAACGCGCGCCAAGGC
EST: AATTGCTTAGGACAACTAACATCTGANGCATCCAAGCAGGATTTGTGAAG CAACGAACACAACGCGCGCCAAGGCGCGCATAAEST: gi|211227794|gb|FL398712.1|FL398712
genomic: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAGgtaactacta ... tgtataacagCAACGAACACAACGCGCGCCAAGGCGCGCATAA
EST: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAG CAACGAACACAACGCGCGCCAAGG
genomic: AATTGCTTAGGACAACTAACATCTGAGGCATCCAAGCAGGATTTGTGAAGgtaactacta ... tgtataacagCAACGAACACAACGCGCGCCAAGG
ttgcatcttaaatttgcttgaagtatacaaaaataataatgcacctgtataacagCAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAACAACAACGACCTCGCCTTCTTCACGTACGAGGAGAAGCGGAAGCTCGGGT
ttgaagtatacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtatacaaaaataataatgcacctgtataacagcaacgaagaattgcatcttaaatttgcttgaagtatacaaaaataataatgcacctgtataacagCAACGAACACAACGCGCGCCAAGGCGCGCATAAGTTACTAGTTCGAAAAACAACAACGACCTCGCCTTCTTCACGTACGAGGAGAAGCGGAAGCTCGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - aaaaata
- - - - - - - - -aatgcac
- - - - - - - - - - gcacctg
- - - - - - - - - - - - - - - - cagcaac
- - - - - - - - - - - - - - - - - - - - - - -ttgcatc