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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcggcgccttcgtttcgcagcgtgcccctgttctgttctgttctgttctgttcgcttctgttcttgcaggtggattagctaaccgtctgcagtcgatgctgtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTGAGGCGCGGCGCGCTGCCCTGGCACGCGCTCTTCGGCCTCTTCGTCTACG

Basic information

species Zea mays
transcript GRMZM2G034668_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034668_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g45090.2 (Oryza sativa), 3'ss of exon 3
gtgctcggcgccttcgtttcgcagcgtgcccctgttctgttctgttctgtt-ctgttcgcttctgttcttgcaggtggattagctaaccgtctgcagtcgatgctgtgt-tcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTGAGGCGCGGCGCGCTGCCCTGGCACGCGCTCTTCGGCCTCTTCGTCTACG
               ||  |  | || || ||   ||      | | |||  |   |   ||||   | |    ||     ||| ||   |     ||   ||||| |  | ||||||| | || || |||||| | ||||||  |||||||||||||||   |||||||||||| |||||||| ||||||| ||| ||||| || ||||||||||
---------------gtgacaaaacg-gcaccaaatcaaactggatttgtaaccaattttttctccccctctccgtta--cagcaaa---tgcatcgtttttgctgcgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149096619|gb|EE182383.2|EE182383
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|18162703|gb|BM332542.1|BM332542
EST:     GGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|37416798|gb|CF646050.1|CF646050
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|37418829|gb|CF647087.1|CF647087
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGG
EST: gi|5268682|gb|AI770646.1|AI770646
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGAC
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGAC
EST: gi|76287085|gb|DV026653.1|DV026653
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|76287084|gb|DV026652.1|DV026652
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|67020876|gb|CO449625.1|CO449625
EST:     GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|211364813|gb|FL445539.1|FL445539
EST:     TCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCKCGGCGCCCGGCGTG
genomic: TCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
EST: gi|16923055|gb|BM076047.1|BM076047
EST:     GCCTGCACTCNTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAG                         TGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG
genomic: GCCTGCACTCCTGGCTCGGGATCGGGACCATCGCTCTGTACGCCATTCAGgtgctcggcg ... gtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgttcttgcaggtggattagctaaccgtctgcagtcgatgctgtgttcgcagTGGGTGTTCGGGTTCGTGACCTTCTTCCTCCCCGGCGCGGCGCCCGGCGTGAGGCGCGGCGCGCTGCCCTGGCACGCGCTCTTCGGCCTCTTCGTCTACG
                     agctaac  putative branch site (score: 2)