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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctgcgctgtgctagttgtctttatgttttttttgttatcctctatactgtgtatcatgacatattctctcttttagGGTATCCAAAAGTAACAAGAAGACTCCAACTCCCAGTGCTCCTGGCACTTCAGTCCAACCTAGTGCTAATAATGTGAAACAGCCAAGACCAATAGCTATT

Basic information

species Zea mays
transcript GRMZM2G034372_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093694|gb|CF053688.1|CF053688
EST:     GGATCTAATGCTCCTGGTGATAAAAGGAAAAGGCCACCTTCCAAAAACAA                         GGTATCCAAAAGTAACAAGAAGACTCCAACTCCCAGTGCTCCTGGCACTTC
genomic: GGATCTAATGCTCCTGGTGATAAAAGGAAAAGGCCACCTTCCAAAAACAAgtaggctgcg ... tctcttttagGGTATCCAAAAGTAACAAGAAGACTCCAACTCCCAGTGCTCCTGGCACTTC
EST: gi|74245589|gb|DT653503.1|DT653503
EST:     GGATCTAATGCTCCTGGTGATAAAAGGAAAAGGCCACCTTCCAAAAACAA                         GGTATCCAAAAGTAACAAGAAGACTCCAACTCCCAGTGCTCCTGGCACTTC
genomic: GGATCTAATGCTCCTGGTGATAAAAGGAAAAGGCCACCTTCCAAAAACAAgtaggctgcg ... tctcttttagGGTATCCAAAAGTAACAAGAAGACTCCAACTCCCAGTGCTCCTGGCACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttttttttgttatcctctatactgtgtatcatgacatattctctcttttagGGTATCCAAAAGTAACAAGAAGACTCCAACTCCCAGTGCTCCTGGCACTTCAGTCCAACCTAGTGCTAATAATGTGAAACAGCCAAGACCAATAGCTATT
                                      catattctctctttt  CT-rich tract
     tttttttgttat  TA-rich tract