1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagttgccttcatctctaaatcattcttgatttcagtattagcttaatttcatttttttgcacctattaacagatataattcaatgtgtgatgcagATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGCTTCCTTTGGTTACCACACTAACTCAAGAAACTTCCCCTTCTATTTTTGG
species | Zea mays |
transcript | GRMZM2G033829_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGAAAGAGGAGGAGAAGTGTGACCTTCTATG ATGGAAAGTTTAAGGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGCEST: gi|101399348|gb|EB821547.1|EB821547
genomic: CTGAAGAAAGAGGAGGAGAAGT-TGACCTTCTATGgtagttgcct ... tgtgatgcagATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGC
EST: TCCATCCATAGTATTACTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATG ATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGCEST: gi|18385207|gb|BM418406.1|BM418406
genomic: TCCATCCATAGTATTACTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATGgtagttgcct ... tgtgatgcagATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGC
EST: CTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATG ATGGAAAGTTTAAGGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGC
genomic: CTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATGgtagttgcct ... tgtgatgcagATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGC
gcttaatttcatttttttgcacctattaacagatataattcaatgtgtgatgcagATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGCTTCCTTTGGTTACCACACTAACTCAAGAAACTTCCCCTTCTATTTTTGG
tattaac putative branch site (score: 1)
tattaacagatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttgccttcatctctaaatcattcttgatttcagtattagcttaatttcatttttttgcacctattaacagatataattcaatgtgtgatgcagATGGAAAGTTTAAAGCATCAGCCATTGCTGATTTTGTGTCTGCTAACAAGCTTCCTTTGGTTACCACACTAACTCAAGAAACTTCCCCTTCTATTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA