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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctgaagtgcagtttctttgccacattcagaatgttgaccaaaagctttcattacttcttgaagttataacaagttttctttctttttccccccacagATATATGAGAGCATGGTTTTCTGTAGGTGTTTATCTATCTCTCATTGCTTTAGTCAGTATATCCTTG

Basic information

species Zea mays
transcript GRMZM2G033671_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762959|gb|DY690360.1|DY690360
EST:     ATATATTCCTTAAACGACGCCCTCTTCAATTTGGGGTGGAAGTATGCTAG                         ATATATGACAGCATGGTTTTCTGTAGGTGTTTATCTATCTCTCATTGCTTT
genomic: ATATATTCCTTAAACGACGCCCTCTTCAATTTGGGGTGGAAGTATGCTAGgtatggtttg ... ccccccacagATATATGAGAGCATGGTTTTCTGTAGGTGTTTATCTATCTCTCATTGCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttcattacttcttgaagttataacaagttttctttctttttccccccacagATATATGAGAGCATGGTTTTCTGTAGGTGTTTATCTATCTCTCATTGCTTTAGTCAGTATATCCTTG
                     ttataac  putative branch site (score: 2)
                               ttttctttctttttcc  putative PPT
                     ttataacaagtttt  TA-rich tract