1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...attcttatgaattttgttgaaacaaaggtcgtcgccacattattctaccatgtatctgtaactttgttgttctgtaatactttaacccaatgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
species | Zea mays |
transcript | GRMZM2G033515_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|31353696|gb|CD438053.1|CD438053
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCNNNNNNNACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|29130361|gb|CB381065.1|CB381065
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|84980627|gb|DW530976.1|DW530976
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|61119247|gb|DN560208.1|DN560208
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|78092177|gb|DV520551.1|DV520551
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|211356165|gb|FL188392.1|FL188392
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA GTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAGEST: gi|211356162|gb|FL188389.1|FL188389
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
EST: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAA TTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
genomic: GACGCAACTGATGACAAGGTCACAGTGGAGGCTGCAGAGGCTACTCTCAAgtaagagttt ... tgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
taccatgtatctgtaactttgttgttctgtaatactttaacccaatgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
ctttaac putative branch site (score: 101)
taatactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcttatgaattttgttgaaacaaaggtcgtcgccacattattctaccatgtatctgtaactttgttgttctgtaatactttaacccaatgttttgcagGTACAATGTGGCCATTAAGTGTGCGACCATTACTCCAG
- - - - - - tttgttg
- - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccaa